Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq25 226 3e-54 seq32 105 6e-18 >seq25 Length=1211561 Score = 226 bits (250), Expect = 3e-54 Identities = 376/538 (70%), Gaps = 4/538 (1%) Strand=Plus/Minus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 ||||| || |||| || ||||| || ||||| || ||| ||| || || || ||||| Sbjct 250422 TCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGA 250363 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 | ||| || ||| |||||||| || |||| ||| | || || |||| |||||| Sbjct 250362 ATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCAT 250303 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521 || ||||| || | |||||| || || |||| || ||||| ||||||||||| ||||| Sbjct 250302 GGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGA 250243 Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCC 23581 || ||| ||||| | || | |||||||| || ||||| |||||| | || || Sbjct 250242 GCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCA 250183 Query 23582 GCCACACTCGAACCTTTTGC-TCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | | || | | |||| ||| | | |||||| | || ||| || || || | Sbjct 250182 GCAATAAACGTA-TTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCCCACCCGCGTT 250124 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 |||||| |||| || |||||||| || ||||| || || |||||||| ||||| || || Sbjct 250123 TTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCCTT 250064 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | | | ||| ||||| |||||| || | | ||||| | || || || || Sbjct 250063 CATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGT 250004 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTC-GACATTAGATTGTACGTGTCGATGGCGGCAT 23819 || |||||| | || | | ||| |||||||||||||| || || || || || | Sbjct 250003 GGGTGAGGCGTGAATCAACCA-CTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGT 249945 Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877 | | || || || || ||||| || | ||||||||| | |||||| ||||| ||||| Sbjct 249944 CCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTC 249887 >seq32 Length=1043406 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||||||||||||| || || || || |||||| |||| ||||| || Sbjct 731095 ATGCAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 731036 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | || | || || || ||| | ||||||||| ||| | || || ||||| Sbjct 731035 GATTCGATTGAGAACGTGAAGGCAAAGA-TCCAGGACAAGGAGGGCATCCCCCCAGACCA 730977 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || || | || ||||||||||| ||||||||||| | || || ||| || || Sbjct 730976 ACAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAA 730917 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGA 31423 ||| || || |||||||| ||||| || || ||| | || | |||||| || Sbjct 730916 CATCCAGAAGGAATCGACCCTTCACCTTGTGCTTCGTCTTCGTGGCGGTTGA 730865 Score = 102 bits (112), Expect = 7e-17 Identities = 166/237 (70%), Gaps = 14/237 (6%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || |||||||| || ||||| || || || | || |||||||| Sbjct 738333 CATGCAGATCTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACC--- 738389 Query 31252 CGACAGTG--TCGA-----AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 ||||| |||| |||| | || || || || ||||| ||| | |||| Sbjct 738390 ---CAGTGATTCGATTGAGAACG-TAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCGC 738445 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | || || |||||| | || |||||||| || |||||||||||| | ||| | | Sbjct 738446 CAGATCAACAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTG 738505 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| ||||||||||| || || || |||||||| || ||| |||| | || |||| Sbjct 738506 ATTACAACATTCAAAAGGAGTCAACGCTTCATCTCGTGCTTCGACTCCGTGGTGGTA 738562 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| ||||| || || || || || | || || ||||| Sbjct 738789 CATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAG 738848 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || | || ||| ||||| || | ||||| || || Sbjct 738849 CGACACAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCGCCTGATCA 738908 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATTAT 31369 ||||||| | || ||||||||||| |||||||| || || |||| | || || Sbjct 738909 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCA--GACTAC 738966 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || |||||||| ||||| || || ||| | ||| | || |||| Sbjct 738967 AACATTCAGAAGGAATCGACCCTTCACCTTGTGCTTCGTCTGCGTGGTGGTA 739018 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||||||||||||| || || || || |||||| |||| ||||| || Sbjct 739018 ATGCAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 739077 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | || | || || | || ||||| || || | || || || ||| Sbjct 739078 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCAG 739137 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || || ||||||||||||||||| ||| | |||| | ||| || ||| Sbjct 739138 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCGGACTCTTTCCGACTACAAC 739197 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || || || ||||| || || ||| | ||| | || || Sbjct 739198 ATTCAAAAGGAGTCAACGCTTCACCTAGTGCTTCGTCTGCGTGGTGG 739244 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || ||||| || || || | || || ||||| | Sbjct 737650 ATGCAAATTTTTGTGAAAACTCTAACCGGCAAGACAATTACGCTGGAGGTGGAACCCAGC 737709 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || |||||||| ||| | || || |||||| Sbjct 737710 GACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 737769 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || |||||||| || || || || ||||||||||| | || || || |||||| Sbjct 737770 CAACGTCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAAC 737829 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| || || || || || || || || |||| Sbjct 737830 ATTCAAAAGGAGTCAACCCTCCACCTTGTGCTCCGACT 737867 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| || || || || || |||||| |||| ||||| || Sbjct 731552 CATGCAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAG 731493 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | || | || || | || ||||| || || | || || || || Sbjct 731492 TGATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCA 731433 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | || || ||||||||||||||||| ||| | |||| | ||| || || Sbjct 731432 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCGGACTCTTTCCGACTACAA 731373 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||| || || || ||||| || || ||| | ||| | || || Sbjct 731372 CATTCAAAAGGAGTCAACGCTTCACCTAGTGCTTCGTCTGCGTGGTGG 731325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445746195637920