Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10 286 4e-72 seq25 196 6e-45 >seq10 Length=2030774 Score = 286 bits (316), Expect = 4e-72 Identities = 450/638 (71%), Gaps = 15/638 (2%) Strand=Plus/Plus Query 33566 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTC 33625 ||||||||| || | ||||| ||||| ||| || || || |||| ||| || | || Sbjct 443144 ATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTC 443203 Query 33626 GTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA 33685 |||| ||| ||||| || ||||| || |||||||| || ||||| || |||||||| || Sbjct 443204 GTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAA 443263 Query 33686 TGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACC 33745 ||| || |||||||| | || || | ||||| || || | || | ||| | || | Sbjct 443264 TGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTA--C 443321 Query 33746 GGCGC--TGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800 || || | | || | |||||| | ||||||||||||||||||| ||||| ||| Sbjct 443322 GGTGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGC 443381 Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTAT 33858 | ||||| ||||| ||||| ||| ||| ||| ||| ||| || || || |||| Sbjct 443382 AACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTC--TACCGGATCCTTTACGTAGGTAT 443439 Query 33859 CGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA 33918 | |||| |||| |||||||| |||||||||||||| | ||| | || | ||| || | Sbjct 443440 CAATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAA 443499 Query 33919 AACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATT 33976 |||| | |||||||| ||| || || || ||||||| ||| | || ||||||||| Sbjct 443500 AACAACGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATT 443557 Query 33977 CACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 34036 || || ||||||||||| || || || ||||| |||| || || | ||| | Sbjct 443558 AACGATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCC 443617 Query 34037 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 34096 | || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| Sbjct 443618 ATCATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCA 443677 Query 34097 AAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 || || || | || || || || | | ||| || ||||| |||||||| || | | Sbjct 443678 GAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCAC 443737 Query 34157 AACAAATCTATTTGGATTTGGTGCAAGGATAGGTTCCA 34194 ||| ||||| ||||| || |||| |||||||||| Sbjct 443738 AACGAATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 443775 >seq25 Length=1211561 Score = 196 bits (216), Expect = 6e-45 Identities = 373/545 (68%), Gaps = 6/545 (1%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||| ||||| || ||||| ||||||||||| || | || ||||| | | | | Sbjct 250419 ACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 250360 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 || || || || ||||| | || | ||| || | ||| | |||||| ||| Sbjct 250359 TCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 250300 Query 63387 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63446 || | || ||||| | | || || |||||||| ||||||||||| | || | |||| Sbjct 250299 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCG 250240 Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506 ||| | || | || | | ||| || | || ||| || || ||||| || || | Sbjct 250239 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCA 250180 Query 63507 ATATAGCCTCCACTGGCA-CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 63563 ||| | | | || || || || | | ||||| |||| || || || || || Sbjct 250179 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGTTT 250123 Query 63564 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATC 63623 || ||||| | ||| ||| |||| | ||||||||| || || || || || || || || Sbjct 250122 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCCTTC 250063 Query 63624 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTA 63683 || |||| | ||||||||||||||| || | || || || |||||||| | || Sbjct 250062 ATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 250003 Query 63684 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63743 || || ||||| | ||||| |||||||| | ||||||||| ||||||||||| | ||| Sbjct 250002 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGTCC 249943 Query 63744 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACA 63803 | ||| |||||| |||| || ||| ||||| ||||||| |||||| || || | Sbjct 249942 ACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTCCCAA 249883 Query 63804 ATTTT 63808 ||||| Sbjct 249882 ATTTT 249878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629789053517280