Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq10 168 6e-37 seq25 138 1e-27 >seq10 Length=2030774 Score = 168 bits (186), Expect = 6e-37 Identities = 505/775 (65%), Gaps = 17/775 (2%) Strand=Plus/Plus Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 ||| || | || || || || ||||| |||||||||| ||||||| | ||||||||| Sbjct 442979 CTCCGTAAGTAGTCGGTCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCAT 443038 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 || |||||||| || || | || |||| | ||| || ||| ||| | ||||| || Sbjct 443039 GCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTC 443098 Query 11569 AATGATTATCGACGTTATAA---CTT----CCTTAGATGGTGGATGTAATAAATGTTTAA 11621 | || || || |||| ||| || ||| | | | || | | |||||||| Sbjct 443099 CCTCATGAT----GTCATAAACCCTTTCCGCCGTAG--GCTTGTTGACA-ATATGTTTAA 443151 Query 11622 ACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAA 11681 | || | || |||||||| || | ||||| |||| ||| || || || ||| || Sbjct 443152 AAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAA 443211 Query 11682 ATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAG 11741 | || | || ||||| | || || || || | ||| || || | |||||||||||||| Sbjct 443212 AGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAG 443271 Query 11742 AAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGT 11798 ||||||||| ||||| | ||| || || || || | | || | || | |||| | Sbjct 443272 AAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTT 443331 Query 11799 TGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTA 11858 | | | ||||| | |||||||| || ||||| || || || |||| | Sbjct 443332 TATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAA 443391 Query 11859 TAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAAC 11918 | |||||||| | | ||||| ||| |||| || ||||| || | | | Sbjct 443392 TGGCGTTAAACAGAAAGTCGCGTTCTACCGGATCCTTTACGTAGGTATCAATCAGAAGAG 443451 Query 11919 TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978 |||||||| |||||||| ||||| | || | ||| | |||||| ||||| || |||| Sbjct 443452 AGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAACGAGCCT 443511 Query 11979 CTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCAC 12038 | | | || || || | |||| | | || ||| ||||| || || ||||||| Sbjct 443512 CGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCAC 443571 Query 12039 TAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTAT 12098 | | || || || || | | || || |||| ||| | | | | | | | Sbjct 443572 TGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTT 443631 Query 12099 CCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTG 12158 |||| ||| | ||| || | |||||| ||||| ||||| ||||| ||| || || | Sbjct 443632 CCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCG 443691 Query 12159 ATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 || || || | | ||| |||||||| || | || || | | |||||| || Sbjct 443692 CTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATCT 443746 >seq25 Length=1211561 Score = 138 bits (152), Expect = 1e-27 Identities = 277/409 (68%), Gaps = 4/409 (1%) Strand=Plus/Minus Query 38128 TGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATA 38187 ||||||||||| | ||| || | | || || |||| ||| | |||||||||| | | Sbjct 250308 TGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACA 250249 Query 38188 TATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTT 38247 || | | | ||| | || | | | | ||| ||||| | |||||| || | || || Sbjct 250248 TAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTA 250189 Query 38248 ATACCGGATATATAAGTACCCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCAC 38305 | || | ||| | ||| ||| ||| || | | || || | || || |||| Sbjct 250188 GTTCCAGCAATAAACGTATTCTTGCTTCGGATGCAGTGAACATTGAGA--CCGATCCCAC 250131 Query 38306 CTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGT 38365 | || | ||| || || | || |||||||| | ||| ||| ||||||| || ||||||| Sbjct 250130 CCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGT 250071 Query 38366 CATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAA 38425 | ||||| |||| || | |||||| |||||||| ||||| | || || || || |||| Sbjct 250070 CGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAA 250011 Query 38426 ATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTA 38485 | | || || || || || || ||||| ||||| |||| ||| || || || || Sbjct 250010 AAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAG 249951 Query 38486 CATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCAT 38534 || | || | ||| | || |||||||||| || || | ||| | ||| Sbjct 249950 CAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACAT 249902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468503564113440