Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10 262 5e-65 seq25 203 4e-47 >seq10 Length=2030774 Score = 262 bits (290), Expect = 5e-65 Identities = 498/724 (69%), Gaps = 17/724 (2%) Strand=Plus/Plus Query 36028 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 36087 ||||||||| || ||||| | || || || || | ||||||||||| ||||||| Sbjct 443030 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 443089 Query 36088 GACCGCGTCTGTTATAATAG-ATATTACTGTTTCTTCACTCGG--TGGATACAATAAATG 36144 |||||| || | || || ||| || |||| | | || || |||||| || Sbjct 443090 GACCGCCTCCCTCATGATGTCATAA-ACCCTTTCCGCCGTAGGCTTGTTGACAATA--TG 443146 Query 36145 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 36204 |||||| || | ||||| ||||| ||| || || || |||| ||| || | ||||| Sbjct 443147 TTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTT 443206 Query 36205 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 36264 ||| ||||| || ||||| || |||||||| || ||||| || ||||| |||||||| Sbjct 443207 ACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGA 443266 Query 36265 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 36324 ||||||||||| | || || | || || || || | || | ||| | || || Sbjct 443267 ACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGC 443326 Query 36325 ACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381 | | || | |||||| | ||||||||||||||||||| ||||| |||| || Sbjct 443327 CTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGT 443386 Query 36382 CTCTATAGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCAATC 36439 | || || ||||| ||| ||| ||| ||| ||| || || || ||||||||| Sbjct 443387 TTGAATGGCGTTAAACAGAAAGTCGCGTTC--TACCGGATCCTTTACGTAGGTATCAATC 443444 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 | |||| |||||||| |||||||||||||| | ||| | ||| | ||| || ||||| Sbjct 443445 AGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAA 443504 Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTA 36557 | |||||||| ||| || || || ||||||| ||| | || ||||||||| || | Sbjct 443505 CGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGA 443562 Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617 | || |||||||| || || || ||||| |||| || || | ||| Sbjct 443563 TGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCAT 443622 Query 36618 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677 | || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| || | Sbjct 443623 TAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAG 443682 Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 36737 | || | || || || || | | ||| || ||||| ||||| || || | | ||| | Sbjct 443683 AGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGA 443742 Query 36738 ATCT 36741 |||| Sbjct 443743 ATCT 443746 >seq25 Length=1211561 Score = 203 bits (224), Expect = 4e-47 Identities = 419/616 (68%), Gaps = 8/616 (1%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACG 66039 ||||||||| || |||||| || | ||| || || || |||| || ||| || | Sbjct 250498 TTCGAACTCCTCCCCCCAA-CAGTCAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGG 250440 Query 66040 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 66099 |||| | | ||| ||||| ||||| || ||||| ||||||||||| || | | Sbjct 250439 TCCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGA 250380 Query 66100 ATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 66159 | | ||| | | | | || || || || ||||| | || | ||| || Sbjct 250379 AGAGATCCCGAGCGCGAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCA 250320 Query 66160 TAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 66219 | ||| |||||| ||||| | || ||||| | | || || |||||||| |||| Sbjct 250319 GTACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTC 250260 Query 66220 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 66279 ||||||| | || | ||||||| | || | || | | ||| || | || |||||||| Sbjct 250259 CCTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGG 250200 Query 66280 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCA-CGAAT--ATTACTAATTGATA 66336 | ||||| || || | ||| | | | ||||| || || | | ||||| Sbjct 250199 ACTCCCCATTAGTTCCAGCAATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA-- 250143 Query 66337 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 66396 |||| || || || || |||| ||||| | ||| ||| |||| | ||| ||||| || | Sbjct 250142 GACCGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATAC 250083 Query 66397 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 66456 |||| ||||| || ||| |||| |||| | ||||||||||||||| || | | | Sbjct 250082 CCTCGATACTGTCGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCG 250023 Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516 | || |||||||| | || || || ||||| | ||||| |||||||| | |||||||| Sbjct 250022 TCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGT 249963 Query 66517 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 66576 | ||||||||||| | ||| | ||| |||||| |||| || ||| ||||| |||| Sbjct 249962 AGGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACA 249903 Query 66577 TGTGCTGAGGTCTTTC 66592 ||| |||||| || || Sbjct 249902 TGTACTGAGGCCTCTC 249887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658142968317840