Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq32 107 2e-18 >seq32 Length=1043406 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| |||||||||||||| || || |||| ||||| | ||| || || Sbjct 737846 GTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCC 737787 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||| ||||||||||| || || || ||||| || ||||| ||| | || | || Sbjct 737786 GCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTC-TTGAATCTTCGCCTT 737728 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| |||| |||||||| | || | ||||||||||| | || Sbjct 737727 CACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGT 737668 Query 139747 TTTTACGAATATTTGCAT 139764 ||| || || |||||||| Sbjct 737667 TTTCACAAAAATTTGCAT 737650 Score = 105 bits (116), Expect = 7e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || ||||||| || ||||||| ||| |||||||| |||||||| || || Sbjct 738789 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAG- 738731 Query 139597 CATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || | | ||| || || | ||| || || || |||||| |||||||| || || Sbjct 738730 -ATAGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGT 738672 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| || || | | || | | ||| |||||||| Sbjct 738671 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCC 738612 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | ||| | ||||||||||| | ||||| || ||||| |||||| Sbjct 738611 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCATA 738561 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | |||| ||||| ||| ||||| ||||||||||| || ||| Sbjct 739245 GCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA 739186 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||| || | |||||| |||||| |||||| ||| |||||||| || || Sbjct 739185 AAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGG 739126 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || |||||||| ||| | || | || | | || | | || | ||||| | Sbjct 739125 GATACCCTCTTTGTC-TTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAA 739067 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | ||| | ||||| ||||| | || |||||||| || |||||| Sbjct 739066 CCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCATA 739017 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | |||| ||||| ||| ||||| ||||||||||| || ||| Sbjct 731324 GCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA 731383 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||| || | |||||| |||||| |||||| ||| |||||||| || || Sbjct 731384 AAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGG 731443 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || |||||||| ||| | || | || | | || | | || | ||||| | Sbjct 731444 GATACCCTCTTTGTC-TTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAA 731502 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | ||||| ||||| | ||| || || || |||||||| Sbjct 731503 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 731551 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || || ||||| ||||| || || || |||| ||||| | ||| Sbjct 748760 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGC 748701 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| ||||||| ||||||||||| || || ||||| || ||||| ||| | || Sbjct 748700 TTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTC-CTGAATCTT 748642 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || || | | || | | ||| ||||||||||||| | || | || ||||| || Sbjct 748641 TGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCAGT 748582 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||| || || ||||| |||||||| Sbjct 748581 CAAAGTCTTCACGAAGATTTGCAT 748558 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| ||| |||||||| || ||||| || ||| | Sbjct 731097 CCACCACGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGAC 731156 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || | ||| || || ||| |||||| |||||||| || || || Sbjct 731157 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 731216 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | | ||| | ||||||||| Sbjct 731217 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACC 731276 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || |||| ||| || || ||||| ||||| Sbjct 731277 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCAT 731323 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| ||| |||||||| || ||||| || ||| | Sbjct 739472 CCACCACGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGAC 739413 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || | ||| || || ||| |||||| |||||||| || || || Sbjct 739412 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 739353 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | | ||| | ||||||||| Sbjct 739352 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACC 739293 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || |||| ||| || || ||||| ||||| Sbjct 739292 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCAT 739246 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| || ||||| ||||| ||||| || || Sbjct 749241 GCCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 749182 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| | ||| || ||||| |||||| |||||||| || ||||| Sbjct 749181 TAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGG 749122 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| ||| || | | || | | ||| |||||||||| Sbjct 749121 AATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCAC 749062 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || |||||||| | || || ||||| || ||||| Sbjct 749061 CTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 749014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496041515899200