Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10 293 3e-74 seq25 205 1e-47 >seq10 Length=2030774 Score = 293 bits (324), Expect = 3e-74 Identities = 521/752 (69%), Gaps = 15/752 (2%) Strand=Plus/Plus Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889 ||||||||| || ||||| | || || || || | ||||||||||| |||||| Sbjct 443030 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 443089 Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGGATG-CAATAAATGT 49947 ||||| || | || || ||| |||| | | || | | || ||||| ||| Sbjct 443090 GACCGCCTCCCTCATGATGTCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATA--TGT 443147 Query 49948 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007 ||||| || | ||||| ||||| ||| || || || |||| ||| || || ||||| Sbjct 443148 TTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTA 443207 Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC 50067 ||| ||||| || ||||| || |||||||| || ||||| || ||||| |||||||| Sbjct 443208 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAA 443267 Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG 50127 ||||||||||| | || || | || || || || || || | ||| | || || Sbjct 443268 CCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCC 443327 Query 50128 CTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 | | || | |||||| | ||||||||||||||||||| ||||| |||| |||| Sbjct 443328 TTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTT 443387 Query 50185 TCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCA 50242 | ||||| ||||| ||| ||| ||| ||| ||| || || || ||||| |||| Sbjct 443388 TGAATGGCGTTAAACAGAAAGTCGCGTTC--TACCGGATCCTTTACGTAGGTATCAATCA 443445 Query 50243 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 50302 |||| |||||||| |||||||||||||| | ||| | || | ||| || ||||| | Sbjct 443446 GAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAAC 443505 Query 50303 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC--AGCTAAATTTTCATTCACTAT 50360 |||||||| ||| || || || ||||||| ||| || || ||||||||| || || Sbjct 443506 GAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGAT 443563 Query 50361 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGT 50420 || |||||||| || || || ||||| |||| || || || ||| | Sbjct 443564 GCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATT 443623 Query 50421 TAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 50480 || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| || || Sbjct 443624 AAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGA 443683 Query 50481 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 || | || || || || | | ||| || ||||| |||||||| || | | ||| || Sbjct 443684 GGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAA 443743 Query 50541 TCTATTTGGATTTGGTGCAAGGATCGGTTCCA 50572 ||| ||||| || |||| || ||||||| Sbjct 443744 TCTTCGGGGATTAGGAACAAGTATAGGTTCCA 443775 >seq25 Length=1211561 Score = 205 bits (226), Expect = 1e-47 Identities = 417/615 (68%), Gaps = 6/615 (1%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||||||||| || |||||| || | | || || || || | || ||| || | Sbjct 250498 TTCGAACTCCTCCCCCCAACAGTCAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGGT 250439 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 |||| | | | ||| ||||| ||||| || ||||| ||||||||||| || | || Sbjct 250438 CCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAA 250379 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||||| | | | | ||| || || || ||||| | || | ||| || Sbjct 250378 GAGATCCCGAGCGCGAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAG 250319 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 | ||| | |||||| ||||| | || ||||| | | || ||||||||||| ||||| Sbjct 250318 TACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCC 250259 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 |||||| | || | ||||||| | || | || | | ||| || | || ||||||||| Sbjct 250258 CTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGA 250199 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCA-CGAAT--ATTACTAATTGATAG 80216 ||||| || || | ||| | | | || || || || | | ||||| | Sbjct 250198 CTCCCCATTAGTTCCAGCAATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--G 250142 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 ||| || || || || |||| ||||| | ||| ||| |||| | ||| ||||| || || Sbjct 250141 ACCGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACC 250082 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 ||| || || || || |||| |||| | ||||||||||||||| || | | || Sbjct 250081 CTCGATACTGTCGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGT 250022 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 || |||||||| | || || || ||||| | ||||| |||||||||| ||||||||| Sbjct 250021 CCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTA 249962 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 ||||||||||| | || | ||| |||||| |||| | ||| ||||| ||||| Sbjct 249961 GGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACAT 249902 Query 80457 GTGCTGAGGTCTTTC 80471 || |||||| || || Sbjct 249901 GTACTGAGGCCTCTC 249887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718236244466640