Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq10 167 2e-36 >seq10 Length=2030774 Score = 167 bits (184), Expect = 2e-36 Identities = 475/723 (66%), Gaps = 14/723 (2%) Strand=Plus/Plus Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 |||| || || |||| ||| ||||| ||| ||||||| ||||||||| || || Sbjct 442986 AGTAGTCGGTCGGCAACGAACCTTATATACTGACACATTAAGCGACAATTCATGCCAATA 443045 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 || | ||||| | | || | |||||| ||| ||| || ||||| | || Sbjct 443046 AGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACTGACCGCCTCCCTCATG 443105 Query 13818 ATAATTGTAATAATCTCATTA-GAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACA 13873 || || |||| | | || | | ||| | || | | ||||||||||| | || Sbjct 443106 AT----GTCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATATGTTTAAAAATGAGGCA 443161 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 |||||||| || ||||| ||||||| ||| || || ||||| ||| || | || Sbjct 443162 TGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCC 443221 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993 ||||| | || || || || | ||| || || | ||||||||| || |||||||||| Sbjct 443222 AGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATAC 443281 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14053 ||||||| ||||| ||||| | | || || | ||| ||| ||||| || | || Sbjct 443282 GCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTTGCAAT 443341 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 ||| | |||||| || | || || || | | || |||| ||| || ||||| Sbjct 443342 CCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAA 443401 Query 14114 TAAATATT--CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACAT 14170 | | | | | |||| | ||| | ||| |||||||| || ||| | ||||| Sbjct 443402 CAGAAAGTCGCGTTCTACCGGATCCTT--TACGTAGGTATCAATCAG-AAGAGAGTACAT 443458 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 |||||| || |||||||| | || | || | |||||||| || | ||| || | Sbjct 443459 TTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAAT 443518 Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 ||| || || |||| | | | |||||||||||| || |||||||| || || Sbjct 443519 TTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCCGC 443578 Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350 || || ||||| | | ||| |||| |||| ||| || || ||| ||| || Sbjct 443579 GAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCCCAGTC 443638 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 | | |||||| | | ||| ||||| ||||||||||| ||| || || ||||| || Sbjct 443639 AGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTCTT 443698 Query 14411 ATA 14413 || Sbjct 443699 GTA 443701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479706256328400