Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq10 172 5e-38 >seq10 Length=2030774 Score = 172 bits (190), Expect = 5e-38 Identities = 406/607 (67%), Gaps = 6/607 (1%) Strand=Plus/Plus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 |||||||||||| | || |||||||| || ||||| ||||||| ||| || || || Sbjct 443144 ATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTC 443203 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 ||| ||| || | || ||||| | || || || || | ||| || || | ||| || Sbjct 443204 GTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAA 443263 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||| || |||||||||| ||||||| ||||| ||||| | || || || | ||| Sbjct 443264 TGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGG 443323 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 13883 ||| ||||| |||| ||||| | |||||| || | || || || | | || Sbjct 443324 TGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAA 443383 Query 13884 TGTTTCGATTGCATTGAATA-AATGT-TCCTTCTCTTTAGTACTTGAAATGTATGTATCA 13941 |||| || || || || | || || | |||| | ||| | ||| |||||| Sbjct 443384 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCGGATCCTT--TACGTAGGTATCA 443441 Query 13942 ATAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 || || ||| | ||||||||||| || |||||||||| || | || | |||||||| Sbjct 443442 ATCAG-AAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAA 443500 Query 14001 ACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAAC 14060 ||| | ||| || | ||| ||||| |||| | | | ||||||||||| Sbjct 443501 ACAACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAAC 443560 Query 14061 AATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT 14120 || |||||||| || || || || ||||| | | ||| |||| |||| ||| Sbjct 443561 GATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATC 443620 Query 14121 GTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 || || ||| ||| || | | |||||| | | ||| ||||| ||||||||||| || Sbjct 443621 ATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAA 443680 Query 14181 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTAC 14240 | || || ||||| || || | |||| || || | ||| || || | || || Sbjct 443681 AGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAAC 443740 Query 14241 AAATCTT 14247 |||||| Sbjct 443741 GAATCTT 443747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478567107962640