Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq32 100 2e-16 seq12 98.7 8e-16 >seq32 Length=1043406 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| |||| || ||| | ||| | || ||||||||| | ||||| ||||| Sbjct 738105 GCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA 738046 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || | || |||||||| || || ||||| ||||| ||||| || || | || Sbjct 738045 AAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGG 737986 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | | || || | ||| | |||| | || || Sbjct 737985 AATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAAC 737926 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| |||||| || || ||||||||||| || |||||||| ||||| Sbjct 737925 TTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| | ||| | ||| | || ||||||||| | |||||||| || Sbjct 738560 CCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAA 738501 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| ||||| || || || || |||||||| ||||||||||| | ||| Sbjct 738500 AGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGA 738441 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | | || || | ||| | || | | || || Sbjct 738440 ATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACT 738381 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| |||||| || || ||||||||||| || ||||| || ||||| Sbjct 738380 TCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738334 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| |||| || ||| | ||| | || ||||||||| | ||||| ||||| Sbjct 738333 GCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA 738274 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || | || |||||||| || || ||||| ||||| ||||| || || | || Sbjct 738273 AAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGG 738214 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| | | || || | ||| | || | | || || Sbjct 738213 AATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAAC 738154 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| |||||| || || ||||||||||| || ||||| || ||||| Sbjct 738153 TTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738106 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| | ||| | |||| || ||||||||| | || || || ||| Sbjct 737876 CCACCACGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGAC 737817 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || ||||| || || || ||||| || | || || || || | || Sbjct 737816 AGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGA 737757 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | | || || | ||| |||||||| | || || Sbjct 737756 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACC 737697 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| || || || ||||||||||||||||||||||||||||| Sbjct 737696 TCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 737650 >seq12 Length=1725783 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| || ||||||| || | ||||| || ||||||||| | ||| || ||||| Sbjct 1077050 GCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGA 1076991 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| ||||| || || ||||| || || | || |||||||| | || Sbjct 1076990 GAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGG 1076931 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || ||| |||| || | ||| | || | | ||| || Sbjct 1076930 TATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGCTCAAC 1076871 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||| |||||||| || ||||| || ||||||||||||||| Sbjct 1076870 CTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 1076822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381352746562308