Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10 271 1e-67 seq25 206 4e-48 >seq10 Length=2030774 Score = 271 bits (300), Expect = 1e-67 Identities = 520/755 (69%), Gaps = 21/755 (3%) Strand=Plus/Plus Query 41935 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 41994 ||||||||| || ||||| | || || || || | ||||||||||| ||||||| Sbjct 443030 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 443089 Query 41995 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGG--TGGATACAATAAAT 42050 |||||| || | || || || || | |||| | | || || |||||| | Sbjct 443090 GACCGCCTCCCTCATGATG--TCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATA--T 443145 Query 42051 GTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGT 42110 ||||||| || | ||||| ||||| ||| || || ||||||| ||| || | |||| Sbjct 443146 GTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGT 443205 Query 42111 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATG 42170 | ||| ||||| || ||||| || |||||||| || ||||| || || || ||||||| Sbjct 443206 TACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATG 443265 Query 42171 ATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 42230 | ||||||||||| | || || | || || || || | || | ||| | || | Sbjct 443266 AACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTG 443325 Query 42231 CACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287 | | | || | |||||| | ||||||||||||||||||| ||||| |||| || Sbjct 443326 CCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACG 443385 Query 42288 TTTCTATGGCATTAAAGAGATAGtttttttCATTAC--TATCTTTAACATATGTATCGAT 42345 ||| ||||| ||||| ||| ||| ||| ||| ||| || || || ||||| || Sbjct 443386 TTTGAATGGCGTTAAACAGAAAGTCGCGTTC--TACCGGATCCTTTACGTAGGTATCAAT 443443 Query 42346 CAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 42405 || |||| |||||||| |||||||||||||| | ||| | || | ||| || ||||| Sbjct 443444 CAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACA 443503 Query 42406 TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC--AGCTAAATTTTCGTTCACT 42463 | ||||||| || || || || ||||||| ||| || || |||||| || || Sbjct 443504 ACGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACG 443561 Query 42464 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGT 42523 || || |||||||| || || || ||||| |||| || || | ||| || Sbjct 443562 ATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCG-CCATC 443620 Query 42524 GTTAA-TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582 |||| | | ||| ||| ||| ||| || | || ||| ||||| || || ||||| || Sbjct 443621 ATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAA 443680 Query 42583 TGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAAC 42642 || || | || || || || | | ||| |||||||| ||||| || || | | ||| Sbjct 443681 AGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAAC 443740 Query 42643 AAATCTATTTGGATTTGGTGCAAGGATCGGTTCCA 42677 ||||| ||||| || |||| || ||||||| Sbjct 443741 GAATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 443775 >seq25 Length=1211561 Score = 206 bits (228), Expect = 4e-48 Identities = 370/536 (69%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| || ||||| ||||||||||| || | || ||||| | | | | | Sbjct 250419 ACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 250360 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || || ||||| | || | ||| || | ||| | |||||| ||| Sbjct 250359 TCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 250300 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | || ||||| | | || || |||||||| ||||||||||| | || | |||| Sbjct 250299 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCG 250240 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261 ||| | || | || | | ||| || | || ||||||||| | ||||| || || | Sbjct 250239 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCA 250180 Query 72262 ATATAGCTTCCACTGGCA-CGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318 ||| | | | || || || || | || ||||| |||| || || || || || Sbjct 250179 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGTTT 250123 Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378 || ||||| | ||| ||| |||| | ||| ||||| || ||||| ||||| || ||| || Sbjct 250122 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCCTTC 250063 Query 72379 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438 || |||| | ||||||||||||||| || | | || || |||||||| | || Sbjct 250062 ATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 250003 Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498 || || ||||| | ||||| |||||||||| ||||||||| ||||||||||| | || Sbjct 250002 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGTCC 249943 Query 72499 ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 | ||| ||| || |||| | ||| ||||| ||||| | |||||| || || Sbjct 249942 ACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTC 249887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671108780615760