Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq10 179 5e-40 seq25 86.0 9e-12 >seq10 Length=2030774 Score = 179 bits (198), Expect = 5e-40 Identities = 392/580 (68%), Gaps = 19/580 (3%) Strand=Plus/Minus Query 125001 CCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACG 125060 |||||| || ||||| |||||||| | ||||| || || ||||| || ||||| Sbjct 443731 CCCATCCAATACCATGATATTTGGGAGTTCTACAAGAAAGCGGTTGCCTCTTTCTGGACA 443672 Query 125061 GTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACT 125120 || || || || ||| | | ||||| || || ||||| | || | | ||| Sbjct 443671 GTTGAGGAAGTTGATTTAGCGAAGGATCTCACTGACTGGGAAAGTCTT---AATGATGGC 443615 Query 125121 GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAAC 125180 ||||| | || || ||| | | ||||| ||||| || | | ||||| ||||| || Sbjct 443614 GAGCGTCACTTCATTTCGTATGTCTTGGCTTTCTTCGCGGCCAGTGATGGCATCGTTAAT 443555 Query 125181 GACAATCTG---TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTT 125236 || ||||| |||| || | | | ||| | ||||| |||| |||| | || Sbjct 443554 GAAAATCTAACTTTGAAT---TTTTGTAACGAGGTCCAAATTCCCGAGGC-TCGTTGTTT 443499 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 ||| ||| | ||| || | || ||| | || || |||||||||||| |||||||| Sbjct 443498 TTATGGAATGCAAGTCGCCGTAGAAAACATTCATTCTGAAATGTACTCTCTTCTGATTGA 443439 Query 125297 CATGTACATTCGCGATCCGCAACGTA-AAC---ACATGCTCTTTAACGCAATCGACACGG 125352 | ||| | |||||| ||| ||| || | || |||||||| || | ||| Sbjct 443438 TACCTACGTAAAGGATCCG----GTAGAACGCGACTTTCTGTTTAACGCCATTCAAACGT 443383 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412 |||||| | | ||| ||||| | |||| || ||||||| | | | ||| | Sbjct 443382 TGCCGTGTGTTGCTAAGAAGGCCGATTGGGCTCTTAGGTGGATTGCAAATAAAAAGGCAC 443323 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472 ||||||| || | |||||||| ||||| || | |||||| | |||||||| ||| | Sbjct 443322 CGTACGCGGAGCGTCTGGTGGCGTTCGCTGCTATTGAGGGCGTATTCTTTTCTGGTTCAT 443263 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 |||| ||||||| |||||||||||||| || |||||||| || || || ||||||| Sbjct 443262 TTGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCTTTAGTAACG 443203 Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || | || |||||| || ||||| ||| || ||||| Sbjct 443202 AGCTGATCAGTCGAGATGAAGGCCTCCACACGGATTTTGC 443163 >seq25 Length=1211561 Score = 86.0 bits (94), Expect = 9e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| ||||| || || || | ||| |||| | ||||| ||||| |||| Sbjct 250256 CAGGGAGGCAACAAACGACCCGGTGCCTTTGCCATCTATCTCGAACCATGGCATCCGGAT 250315 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || | | ||| | ||| | || || ||| ||||| ||||||| || || |||| Sbjct 250316 GTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCTGAAGAGATTCGCGCTCGGGAT 250375 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || ||||| ||| | || ||| | ||||||||||| || | | ||| | | Sbjct 250376 CTCTTCCTCGCACTTTGGATTCCCGATCTATTCATGAAGCGAGTTGAGGCAGGTAGTTCG 250435 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| | | ||| |||| | || |||||||| | || || ||||| || ||||| Sbjct 250436 TGGACCTTTATGGACCCCCATGAGTGCCCCGGTCTTGCTGACTGTTGGGGGGAGGAGTTC 250495 Query 97116 GA 97117 || Sbjct 250496 GA 250497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741025611491760