Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq12 113 3e-20 seq32 104 2e-17 >seq12 Length=1725783 Score = 113 bits (124), Expect = 3e-20 Identities = 169/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||| | ||||| ||| | ||| || || || || ||||| || || || ||| Sbjct 1077051 TGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGG 1076992 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | |||| || || || || || ||| | || | |||||||| || || Sbjct 1076991 AGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTG 1076932 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | ||||| |||||||| ||||| ||| ||||| | || |||| ||| || || Sbjct 1076931 GTATTCCCTCTTTGTCTTGGATTTTTGCT-TTTACGTTCTCAATGGAATCACTTGGCTCA 1076873 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA-TATTTG 15368 || || | ||| |||||||| || || ||||| || ||||||||||||| |||||| Sbjct 1076872 ACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATTATTTG 1076817 >seq32 Length=1043406 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| ||||| || || || ||||| |||||||| ||| ||| | | |||| || Sbjct 739226 ACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCC 739167 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || ||||||||||| | |||||||| || || || ||| || || |||||||| | Sbjct 739166 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGA 739107 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || || | ||| ||| || || || | ||| || || || Sbjct 739106 ATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 739047 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| ||||| || || |||||| Sbjct 739046 CCGGTAAGAGTCTTTACGAAGATCTGCATA 739017 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| ||||| || || || ||||| |||||||| ||| ||| | | |||| || Sbjct 731343 ACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCC 731402 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || ||||||||||| | |||||||| || || || ||| || || |||||||| | Sbjct 731403 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGA 731462 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || || | ||| ||| || || || | ||| || || || Sbjct 731463 ATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 731522 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| |||||||| Sbjct 731523 CCGGTAAGCGTCTTCACAAAGATTTGCAT 731551 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAATT 15218 |||||||| || || || || |||||||| ||| | ||| || | ||||| || | Sbjct 739676 TGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGG--ACAATGTGCGACCATCTTCCAACT 739619 Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTT 15278 | ||||||||| | ||||| ||||||||||| || || || |||||||| ||| | Sbjct 739618 GCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGGATGCCCTCTTTGTCTTGAATCT 739559 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 || ||| ||| | || || | ||| ||| || || || | ||| || || || || | Sbjct 739558 TGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGG 739499 Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364 | ||||| ||||| || || |||||| Sbjct 739498 TAAGAGTCTTTACGAAGATCTGCATA 739473 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || || ||||| ||||||||||| ||| | | ||||||| || || Sbjct 738537 ATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTG 738478 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | |||||||| ||||| || ||||| || || || || || || Sbjct 738477 CTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTCCTTATCTTGGATCTT 738418 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 |||||| | || || | ||| || ||| || |||| || ||||| || || || Sbjct 738417 CGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGT 738358 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| || ||||| Sbjct 738357 TAGAGTCTTGACAAAGATCTGCAT 738334 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || ||||| ||||| || || || | | | ||||| || || Sbjct 737852 TGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGC 737793 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | || | |||||| ||||| |||||| || || ||||| ||| || Sbjct 737792 TTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTC 737733 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || ||||| ||| || || | ||||| || || || || Sbjct 737732 GCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTT 737673 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 |||||||| |||||||||||||| Sbjct 737672 AGAGTTTTCACAAAAATTTGCAT 737650 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAATT 15218 |||||||| || || || || |||||||| ||| | ||| || | ||||| || | Sbjct 730893 TGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGG--ACAATGTGCGACCATCTTCCAACT 730950 Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-T 15277 | ||||||||| | ||||| ||||||||||| || || || || ||||| || | Sbjct 730951 GCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCT 731010 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 |||| ||| || | || || | ||| ||| || || || | ||| || || || || Sbjct 731011 TTGC-CTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCG 731069 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| || || |||||| Sbjct 731070 GTAAGAGTCTTTACGAAGATCTGCATA 731096 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || ||||| |||||||| || ||| | | | ||||| || || Sbjct 749216 TGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAACTGC 749157 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 ||||||||| | ||||| ||||| ||||| ||||| || || ||||| || ||| Sbjct 749156 TTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTT 749097 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| || | || || | || || || || || | || || ||||| || || Sbjct 749096 GC-CTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGT 749038 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || || ||||| Sbjct 749037 TAGAGTCTTCACGAAGATCTGCAT 749014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362163194622066