Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq32 107 1e-18 seq3 84.2 1e-11 >seq32 Length=1043406 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| ||||| || || || ||||||| || | || ||||| ||||| || Sbjct 737846 GTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCC 737787 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| |||| |||||||||||||| || ||||| || || || |||| | || Sbjct 737786 GCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTC 737727 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || | | ||| |||||| |||||| || ||||| || || || || || || |||||| Sbjct 737726 ACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTT 737667 Query 33353 TTTACGAAAATTTGCAT 33369 || || ||||||||||| Sbjct 737666 TTCACAAAAATTTGCAT 737650 Score = 102 bits (112), Expect = 5e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | ||| | || ||||| ||||| || ||||| || || | | || | || || Sbjct 738087 CACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTC 738028 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 ||||||||| ||| ||| || ||||| |||||||| | || ||||| || || || Sbjct 738027 CAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTATCTTG 737968 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | ||||| ||||| | | ||||| ||| |||||| ||| || || ||||| || Sbjct 737967 GATCTTCGCC---TTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGT 737911 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||| || || ||||| ||||| Sbjct 737910 CTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | ||| | || ||||| ||||| || ||||| || || | | || | || || Sbjct 738315 CACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTC 738256 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 ||||||||| ||| ||| || ||||| |||||||| | || |||||||| || || Sbjct 738255 CAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTG 738196 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | ||||| ||||| | | ||||| || |||||| ||| || || ||||| || Sbjct 738195 GATCTTCGCC---TTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGT 738139 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || ||||| || || || || |||||| Sbjct 738138 CTTGCCGGTTAGAGTCTTGACAAAGATCTGCATG 738105 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | ||| | || ||||| ||||| || ||||||||||| | | || | ||| || Sbjct 738543 CACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTC 738484 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276 ||| ||||| ||| || || ||||| || || || | || ||||| || || || Sbjct 738483 CAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTCCTTATCTTG 738424 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | ||||| ||||| | | ||||| || |||||| ||| || || ||||| || Sbjct 738423 GATCTTCGCC---TTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGT 738367 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || ||||| || || || || |||||| Sbjct 738366 CTTGCCGGTTAGAGTCTTGACAAAGATCTGCATG 738333 >seq3 Length=2943993 Score = 84.2 bits (92), Expect = 1e-11 Identities = 140/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || |||||||||||||| || || || ||||||||||| ||| Sbjct 307585 GTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCA 307644 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGT 33289 ||| || | ||| || ||||| | || || || || || || |||| ||| Sbjct 307645 GCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCC--- 307701 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 || || | | ||| | ||| ||| | || || ||||| || ||||| || |||||| Sbjct 307702 TTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGA 307761 Query 33350 GTTTTTACGAAAATTTGCATG 33370 ||||| || ||||| |||||| Sbjct 307762 GTTTTCACAAAAATCTGCATG 307782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318763512620148