Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq12 158 3e-33 seq32 150 4e-31 seq3 127 5e-24 >seq12 Length=1725783 Score = 158 bits (174), Expect = 3e-33 Identities = 178/237 (75%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 104325 TATTT-ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 ||||| || || |||| ||| || || || ||||| | ||| || || || ||||||||| Sbjct 1077058 TATTTCATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTA 1076999 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| || ||||| | ||||| || | || || || || || || |||| |||||| Sbjct 1076998 TAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGA 1076939 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || || |||||||| ||||| || || || ||||||||||| || || | || ||| || Sbjct 1076938 TCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTT 1076879 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || ||||| || || || || || ||||| || || || ||||| || |||||| Sbjct 1076878 GGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 1076822 >seq32 Length=1043406 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||| |||||||| || ||||| ||||| || | ||| || Sbjct 739002 AAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATC 738943 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | || || ||||| || || | | ||| |||||||| || || || || ||||| Sbjct 738942 CTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATC 738883 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | || ||||||||||| || || || |||||||| Sbjct 738882 CTGAATCTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGT 738823 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || || ||||| ||||| Sbjct 738822 CTTCCCAGTCAGCGTCTTCACGAATATTTGCAT 738790 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| ||||||||||| || || | ||| ||||| | || || || Sbjct 737846 GTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCC 737787 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| ||||| | || || || || || || || || || || |||||||| || || Sbjct 737786 GCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTC 737727 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || ||||| ||||| ||||| || ||||| ||||| || || || ||| Sbjct 737726 ACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTT 737667 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 737666 TTCACAAAAATTTGCAT 737650 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || ||||| | || ||||| || || || || |||||| Sbjct 748787 ATTCCACCACGAAGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 748728 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | ||| ||||| | || ||||| ||||| || || | || ||||| || Sbjct 748727 GACAAGGTGCGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGT 748668 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || |||||||||||||| || ||||| |||| | || || || || Sbjct 748667 GGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCC 748608 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| || || || ||||| | || || || || || ||||| Sbjct 748607 ACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 748558 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || |||||||||||||| | ||| || || | || ||||| Sbjct 738758 GTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGACCATCCTCCAACTGCTTTCCT 738699 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | || || || || || || || || || ||||| ||||| || || Sbjct 738698 GCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 738639 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || |||| | || || || || ||||| | || || ||||| || || || ||| Sbjct 738638 ACGTTCTCTATCGAGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTT 738579 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 738578 TTAACAAATATCTGCAT 738562 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| || | || | ||| || || | || ||||| Sbjct 731127 GTCGACTCTTTCTGGATGTTGTAGTCGGACAACGTGCGACCATCCTCCAACTGCTTTCCT 731186 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | || || || || || || || || || ||||| ||||| || || Sbjct 731187 GCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 731246 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || |||| | || || || || ||||| | ||||| ||||| ||||| || || Sbjct 731247 ACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAACGTAATTGTCTTCCCAGTCAGCGTC 731306 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 731307 TTCACAAATATCTGCAT 731323 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| || | || | ||| || || | || ||||| Sbjct 739442 GTCGACTCTTTCTGGATGTTGTAGTCGGACAACGTGCGACCATCCTCCAACTGCTTTCCT 739383 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | || || || || || || || || || ||||| ||||| || || Sbjct 739382 GCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 739323 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || |||| | || || || || ||||| | ||||| ||||| ||||| || || Sbjct 739322 ACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAACGTAATTGTCTTCCCAGTCAGCGTC 739263 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 739262 TTCACAAATATCTGCAT 739246 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || || || || || ||||||||||| || | || || Sbjct 749226 AAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATC 749167 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || || ||||| || || | | || || || ||||| || || || || || Sbjct 749166 TTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGGAATGCCCTCCTTGTC 749107 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| |||||||| || || || || | | || || || || ||||| ||||| || || Sbjct 749106 CTGGATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGT 749047 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || || || ||||||||| Sbjct 749046 TTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 749013 >seq3 Length=2943993 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||||||||| || ||||||| | | || || Sbjct 307569 AAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATC 307628 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | ||| || ||||||||||| || | |||||| || || || || || || || || Sbjct 307629 CTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTC 307688 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || || ||||| || | | |||| || || ||||| || || ||||| Sbjct 307689 TTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGT 307748 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| ||||| ||||| |||||||| Sbjct 307749 TTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 307781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151344908189208