Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq321 84.2 1e-11 seq22 84.2 1e-11 >seq321 Length=86846 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||| |||||||||||||||||||||||| ||| ||||||||| || Sbjct 40148 GGCTCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAACCGACTGAGCTATCCGG 40089 Query 11528 CCGTCGACGA 11537 || |||||| Sbjct 40088 CCACCGACGA 40079 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||| |||||||||||||||||||||||| ||| ||||||||| || Sbjct 56039 GGCTCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAACCGACTGAGCTATCCGG 56098 Query 11528 CCGTCGACGA 11537 || |||||| Sbjct 56099 CCACCGACGA 56108 >seq22 Length=1285516 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||| |||||||||||||||||||||||| ||| ||||||||| || Sbjct 328455 GGCTCGAACCCTCGACATTCGCGTTATTAGCACGACGCTCTAACCGACTGAGCTATCCGG 328514 Query 11528 CCGTCGACGA 11537 || |||||| Sbjct 328515 CCACCGACGA 328524 Lambda K H 0.640 0.410 0.923 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261479644213576