Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq32 102 7e-17 seq3 91.5 1e-13 seq12 89.7 5e-13 >seq32 Length=1043406 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | ||| ||||||||||| | ||| || || || ||| ||| |||| Sbjct 748765 CAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCA 748706 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 ||| ||||| ||||||| | | |||||||||||| ||||| || || ||||| | || Sbjct 748705 ACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAA 748646 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | |||||||| || | | | |||| | | || || || | ||||| ||||| | Sbjct 748645 TCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGC 748586 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| | ||| ||||| ||||| ||||| Sbjct 748585 CAGTCAAAGTCTTCACGAAGATTTGCAT 748558 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | || || |||||||| | ||| || || | ||| | ||| || Sbjct 749223 CACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTC 749164 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| || || | ||||| |||| |||||| ||||||||||| || || ||||| | Sbjct 749163 CAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTG 749104 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || |||||||| ||| | | | |||| | | || || || | ||||| ||||| Sbjct 749103 GATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTT 749044 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||| ||||||||||| Sbjct 749043 GCCGGTTAGAGTCTTCACGAAGATCTGCAT 749014 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || |||||||| | ||| || ||| | |||| | ||| |||| || || || Sbjct 738302 GTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCCAATTGCTTACCA 738243 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || | ||||| ||||| ||||| ||||| || || | || || ||||| Sbjct 738242 GCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTTCGCCTTT 738183 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | | ||| | | || || || | ||| ||||| || || || ||||| Sbjct 738182 ACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTC 738123 Query 94991 TTCACAAAGATCTGCATGC 95009 || |||||||||||||||| Sbjct 738122 TTGACAAAGATCTGCATGC 738104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||| | ||| | ||| | || || |||||||| | |||||| || || ||| Sbjct 737865 TCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACC 737806 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| || || ||||||||| | |||||| || || ||||| || || || Sbjct 737805 ATCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTT 737746 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| || | | ||||| | | || || || | ||| || Sbjct 737745 GTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAAT 737686 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || |||||||||||||| || ||||| Sbjct 737685 TGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 737650 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||| | ||| | || || |||||||| | ||| || ||| | || || || ||| Sbjct 731342 CACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGG--AAAGAGTCCGACCGTCC 731399 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| |||||| || ||||||| || | |||||||| || || ||||| |||||||| Sbjct 731400 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCT 731459 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||| || ||||| || | | | ||| | || || || | ||||| || Sbjct 731460 TGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTC 731519 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || ||||| || ||||||||||| |||||| Sbjct 731520 TTCCCGGTAAGCGTCTTCACAAAGATTTGCATG 731552 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||| | ||| | || || |||||||| | ||| || ||| | || || || ||| Sbjct 739227 CACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGG--AAAGAGTCCGACCGTCC 739170 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| |||||| || ||||||| || | |||||||| || || ||||| |||||||| Sbjct 739169 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCT 739110 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||| || ||||| || | | | ||| | || || || | ||||| || Sbjct 739109 TGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTC 739050 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||||||| || || ||||||||||| Sbjct 739049 TTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739018 >seq3 Length=2943993 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||| || || || |||| || | | || || ||||| ||||| || || || Sbjct 307626 ATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTT 307685 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| || | | || || | | | ||||| |||| ||||| Sbjct 307686 GTCTTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGAT 307745 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || ||||||||||||||||| |||||||||| Sbjct 307746 AGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCATGC 307783 >seq12 Length=1725783 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| ||| || ||| | ||||| | | ||| |||||||| || || || |||||| Sbjct 1076977 TCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTG 1076918 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | |||||||| || ||| | | | ||| | ||| || || |||| || || Sbjct 1076917 TCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCA-CTTGGCTCAACCTCAAGGGTTAT 1076859 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||| ||||| || ||||| || ||||| Sbjct 1076858 GGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 1076823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448270881201360