Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 178 2e-40 seq1690 138 2e-28 seq371 138 2e-28 seq552 123 4e-24 seq3182 122 1e-23 seq417 120 5e-23 seq222 120 5e-23 seq2224 114 2e-21 >seq1 Length=7334011 Score = 178 bits (196), Expect = 2e-40 Identities = 199/266 (75%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||| | | | |||||| ||||| || |||||||| || ||||| |||||| Sbjct 393691 GCAAAGCGCCATAGGAAAGTTCTTCGCGATAATATTCAAGGAATAACTAAGCCTGCTATC 393632 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || |||||||| || || |||||| | ||||| | |||| || |||| Sbjct 393631 CGTCGTCTTGCGCGTCGTGGAGGTGTGAAGCGTATTTCTGGCCTCATCTACGAGGAGACC 393572 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | || ||||| | ||| |||||| | ||||||| || |||||||| Sbjct 393571 CGTGGTGTACTAAAAGTCTTCTTGGAGAACGTTATACGTGATGCTGTCACATATACCGAA 393512 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| ||||| ||||||| | || || || |||| ||||| || Sbjct 393511 CACGCCAAACGCAAGACCGTCACAGCCATGGACGTAGTTTACGCTCTGAAGCGTCAGGGT 393452 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 || | | | ||||| ||||| |||| Sbjct 393451 CGCACGCTCTATGGCTTTGGTGGTTA 393426 >seq1690 Length=5246 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 1999 CTGCGTGACAACATCCAGGGCATTACGAAGCCGGCCATTCGACGTCTGGCACGTCGTGGT 2058 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 2059 GGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 2118 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||| || || || |||||||| || || ||||| ||| Sbjct 2119 CTGGAGAACGTCATTCGCGATGCCGTCACGTACACTGAGCACGCGAAGCGGAAGACCGTC 2178 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | || ||||| |||| ||||| || |||| | || || ||||| Sbjct 2179 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTACCCTCTACGGCTTTGG 2237 >seq371 Length=72635 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 16389 CTGCGTGACAACATCCAGGGCATTACGAAGCCGGCCATTCGACGTCTGGCACGTCGTGGT 16448 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 16449 GGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 16508 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||| || || || |||||||| || || ||||| ||| Sbjct 16509 CTGGAGAACGTCATTCGCGATGCCGTCACGTACACTGAGCACGCGAAGCGGAAGACCGTC 16568 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | || ||||| |||| ||||| || |||| | || || ||||| Sbjct 16569 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTACCCTCTACGGCTTTGG 16627 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 43966 CTGCGTGACAACATCCAGGGCATTACGAAGCCGGCCATTCGACGTCTGGCACGTCGTGGT 43907 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 43906 GGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 43847 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||| || || || |||||||| || || ||||| ||| Sbjct 43846 CTGGAGAACGTCATTCGCGATGCCGTCACGTACACTGAGCACGCGAAGCGGAAGACCGTC 43787 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | || ||||| |||| ||||| || |||| | || || ||||| Sbjct 43786 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTACCCTCTACGGCTTTGG 43728 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 70862 CTGCGTGACAACATCCAGGGCATTACAAAGCCGGCCATTCGACGTCTGGCACGTCGTGGT 70803 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 70802 GGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 70743 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||| || || || |||||||| || || ||||| ||| Sbjct 70742 CTGGAGAACGTCATTCGCGATGCCGTCACGTACACTGAGCACGCGAAGCGGAAGACCGTC 70683 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | || ||||| |||| ||||| || |||| | || || ||||| Sbjct 70682 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTACCCTCTACGGCTTTGG 70624 Score = 136 bits (150), Expect = 6e-28 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 52580 CTGCGTGACAACATCCAGGGCATTACGAAGCCGGCCATTCGACGTCTGGCACGTCGTGGT 52521 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 52520 GGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 52461 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||| || || || |||||||| || || ||||| ||| Sbjct 52460 CTGGAGAACGTCATTCGCGATGCCGTCACGTACACTGAGCACGCGAAGCGGAAGACCGTC 52401 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 || | ||||| | || ||||| |||| ||||| || |||| Sbjct 52400 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTA 52358 >seq552 Length=46680 Score = 123 bits (136), Expect = 4e-24 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || || || || ||||| ||||||||||| Sbjct 2081 CGTGACAATATTCAGGGTATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGC 2140 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || ||||||| | |||| || |||| || | ||| | ||| | || || Sbjct 2141 GTGAAACGCATCTCTGGGCTCATCTACGAGGAGACCCGGGGTGTGCTCAAGGTGTTTCTG 2200 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | ||||||| || || || |||||||| || || ||||| |||||| Sbjct 2201 GAGAACGTAATTCGTGATGCTGTCACGTACACTGAGCACGCGAAGCGCAAGACCGTCACC 2260 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| | || ||||| | || ||||| ||||||| | ||||| || || Sbjct 2261 GCAATGGACGTGGTGTATGCCCTCAAGCGTCAGGGCCGTACTCTGTATGGCTTCGG 2316 >seq3182 Length=1340 Score = 122 bits (134), Expect = 1e-23 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| ||||| || || ||||| |||||||||||| Sbjct 738 CGTGACAATATACAGGGCATCACAAAGCCTGCTATTCGACGCCTGGCACGTCGTGGTGGA 797 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || ||||||| | |||| || ||| || | ||| | ||| | || || Sbjct 798 GTGAAACGCATCTCTGGGCTCATCTACGAGGAGGCACGGGGTGTACTCAAGGTGTTTCTG 857 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | || ||| || || || |||||||| || || |||||||||||| Sbjct 858 GAGAACGTAATTCGCGACGCTGTCACGTACACTGAGCACGCGAAGCGCAAGACTGTCACC 917 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| | || ||||| | || || || ||||||| | ||||| || || || Sbjct 918 GCAATGGACGTGGTGTATGCTCTCAAGCGCCAGGGCCGTACTCTGTATGGCTTCGGCGGT 977 Query 16697 TA 16698 || Sbjct 978 TA 979 >seq417 Length=63850 Score = 120 bits (132), Expect = 5e-23 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || || || || ||||| ||||||||||| Sbjct 1117 CGTGACAATATTCAGGGTATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGC 1058 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 | || || ||||||| | ||| ||||||| || | ||| | ||| | || || Sbjct 1057 GCGAAACGCATCTCTGGGCTCATCTGCGAAGAGACCCGGGGTGTGCTCAAGGTGTTTCTG 998 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 || ||| || | ||||||| || || || |||||||| || || ||||| |||||| Sbjct 997 GGGAACGTAATTCGTGATGCTGTCACGTACACTGAGCACGCGAAGCGCAAGACCGTCACC 938 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||| | || ||||| | || ||||| ||||||| | ||||| || || Sbjct 937 TCAATGGACGTGGTGTATGCCCTCAAGCGTCAGGGCCGTACTCTGTATGGCTTCGG 882 >seq222 Length=117204 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16472 GGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCT 16531 || ||||| ||||| || || || || ||||| ||||||||||| || || || ||||| Sbjct 76205 GGTATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGCGTGAAACGCATCTCT 76146 Query 16532 GGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCAT 16591 || | |||| || |||| || | ||| | ||| | || || ||| ||| || | | Sbjct 76145 GGGCTCATCTACGAGGAGACCCGGGGTGTGCTCAAGGTGTTTCTGGAGAACGTAATTCGT 76086 Query 16592 GATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTC 16651 |||||| || || || |||||||| || || ||||| |||||| | ||||| | || Sbjct 76085 GATGCTGTCACGTACACTGAGCACGCGAAGCGCAAGACCGTCACCGCAATGGACGTGGTG 76026 Query 16652 TATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| | || ||||| ||||||| | ||||| || || Sbjct 76025 TATGCCCTCAAGCGTCAGGGCCGTACTCTGTATGGCTTCGG 75985 >seq2224 Length=3174 Score = 114 bits (126), Expect = 2e-21 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || || || || ||||| ||||||||||| Sbjct 2832 CGTGACAATATTCAGGGTATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGC 2891 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 | || || ||||||| | ||| ||||||| || | ||| | ||| | || || Sbjct 2892 GCGAAACGCATCTCTGGGCTCATCTGCGAAGAGACCCGGGGTGTGCTCAAGGTGTTTCTG 2951 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 || ||| || | ||||||| || || || |||||||| || || ||||| |||||| Sbjct 2952 GGGAACGTAATTCGTGATGCTGTCACGTACACTGAGCACGCGAAGCGCAAGACCGTCACC 3011 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| | || ||||| | || ||||| ||||||| | ||||| || || Sbjct 3012 GCAATGGACGTGGTGTATGCCCTCAAGCGTCAGGGCCGTACTCTGTATGGCTTCGG 3067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071884722818