Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq10 89.7 5e-13 >seq10 Length=2030774 Score = 89.7 bits (98), Expect = 5e-13 Identities = 366/582 (63%), Gaps = 2/582 (0%) Strand=Plus/Plus Query 21453 ACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTA 21512 |||||| |||||||| || | ||||||||||| || | |||||||| | ||| | Sbjct 443139 ACAATA--TGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGA 443196 Query 21513 TTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTG 21572 | | || ||| ||| || | || ||||| | || | ||| || | ||| || || | Sbjct 443197 TCAGCTCGTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGG 443256 Query 21573 ACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCAC 21632 | ||||||| || |||||||| | |||||||| ||||| || || || | || || Sbjct 443257 AAGCAAATGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCG 443316 Query 21633 CGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATAC 21692 |||| | | | ||||| ||||| | ||||| | ||||| | || || Sbjct 443317 CGTACGGTGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACAC 443376 Query 21693 AATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNN 21752 | | || | ||| || || || ||| | ||| | ||| ||| | Sbjct 443377 ACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCGGATCCTTTACGTAGG 443436 Query 21753 NNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGT 21812 | |||||||||||||| || ||||||| || | || | ||| | Sbjct 443437 TATCAATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCAT 443496 Query 21813 AAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCAT 21872 ||||||| | ||||| | | ||| |||||| | |||| || | ||||||| Sbjct 443497 AAAAACAACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCAT 443556 Query 21873 TTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGT 21932 | || || ||||||||||| || || || ||||| | || || || | || ||| Sbjct 443557 TAACGATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGC 443616 Query 21933 TATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCC 21992 ||| | | ||| ||| || | ||| || | |||||| ||||| ||| ||||| Sbjct 443617 CATCATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCC 443676 Query 21993 AAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCAT 22034 | || |||| || || || || | ||| ||||||| Sbjct 443677 AGAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCAT 443718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531876691596240