Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq10 282 5e-71 seq25 199 5e-46 >seq10 Length=2030774 Score = 282 bits (312), Expect = 5e-71 Identities = 521/754 (69%), Gaps = 19/754 (3%) Strand=Plus/Plus Query 33174 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 33233 ||||||||| || ||||| | || || || || | ||||||||||| |||||| Sbjct 443030 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 443089 Query 33234 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGGATG-CAATAAATGT 33291 ||||| || | || || ||| |||| | | || | | || ||||| ||| Sbjct 443090 GACCGCCTCCCTCATGATGTCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATA--TGT 443147 Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 ||||| || | ||||| ||||| ||| || || || |||| ||| || || ||||| Sbjct 443148 TTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTA 443207 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 ||| ||||| || ||||| || |||||||| || ||||| || |||||||| ||||| Sbjct 443208 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAA 443267 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 ||||||||||| | || || | ||||| || || | || | ||| | || ||| | Sbjct 443268 CCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTA--CGGTG 443325 Query 33472 C--TGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33526 | | | || | |||||| | ||||||||||||||||||| ||||| |||| || Sbjct 443326 CCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACG 443385 Query 33527 TTTCTATGGCATTAAAGAGATAGtttttttCATTAC--TATCTTTAACATAAGTATCGAT 33584 ||| ||||| ||||| ||| ||| ||| ||| ||| || || || ||||| || Sbjct 443386 TTTGAATGGCGTTAAACAGAAAGTCGCGTTC--TACCGGATCCTTTACGTAGGTATCAAT 443443 Query 33585 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33644 || |||| |||||||| |||||||||||||| | ||| | || | ||| || ||||| Sbjct 443444 CAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACA 443503 Query 33645 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACT 33702 | |||||||| ||| || || || ||||||| ||| | | ||||||||| || Sbjct 443504 ACGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACG 443561 Query 33703 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33762 || || |||||||| || || || ||||| |||| || || | ||| | Sbjct 443562 ATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCA 443621 Query 33763 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 | || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| || Sbjct 443622 TTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAA 443681 Query 33823 GATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACA 33882 || || | || || || || | | ||| || |||| |||||||| || | | ||| Sbjct 443682 GAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACG 443741 Query 33883 AATCTATTTGGATTTGGTGCAAGGATGGGTTCCA 33916 ||||| ||||| || |||| || ||||||| Sbjct 443742 AATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 443775 >seq25 Length=1211561 Score = 199 bits (220), Expect = 5e-46 Identities = 418/616 (68%), Gaps = 8/616 (1%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACG 63195 ||||||||| || |||||| || | ||| || || || |||| || ||| || | Sbjct 250498 TTCGAACTCCTCCCCCCAA-CAGTCAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGG 250440 Query 63196 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63255 |||| | | ||| ||||| ||||| || ||||| ||||||||||| || | | Sbjct 250439 TCCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGA 250380 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 | ||||| | | | | || || || || ||||| | || | ||| || Sbjct 250379 AGAGATCCCGAGCGCGAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCA 250320 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 | ||| | |||||| ||||| | || ||||| | | || || |||||||| |||| Sbjct 250319 GTACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTC 250260 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 ||||||| | || | ||||||| | || | || | | ||| || | || ||| || | Sbjct 250259 CCTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGG 250200 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA-CGAAT--ATTACTAATTGATA 63492 | ||||| || || | ||| | | | || || || || | | ||||| Sbjct 250199 ACTCCCCATTAGTTCCAGCAATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA-- 250143 Query 63493 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATAC 63552 |||| || || || || |||| ||||| | ||| ||| |||| | ||||||||| |||| Sbjct 250142 GACCGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATAC 250083 Query 63553 CCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63612 |||| || || || || |||| |||| | ||||||||||||||| || | | | Sbjct 250082 CCTCGATACTGTCGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCG 250023 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672 | || |||||||| | || || || ||||| | ||||| |||||||| | |||||||| Sbjct 250022 TCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGT 249963 Query 63673 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63732 | ||||||||||| | ||| | ||| |||||| |||| || ||| ||||| |||| Sbjct 249962 AGGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACA 249903 Query 63733 TGTGCTGAGGTCTTTC 63748 ||| |||||| || || Sbjct 249902 TGTACTGAGGCCTCTC 249887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622918964918160