Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq25 152 1e-31 seq10 91.5 4e-13 >seq25 Length=1211561 Score = 152 bits (168), Expect = 1e-31 Identities = 487/739 (66%), Gaps = 30/739 (4%) Strand=Plus/Plus Query 363393 CGGATATAAGACGATGGAGAAATCCTACCTATCTC-GTATCAATGGTGATATTGTTGAAC 363451 || || | ||||| | ||||| || || || |||| ||| |||| | ||| || Sbjct 249832 CGTATTTTAGACGTTAGAGAAGTCGTATCT-TCTCCGTAGGGATGGGAAAATTTGGGAGA 249890 Query 363452 GCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCG 363511 | || ||| | ||||| ||||| || | || ||||| ||| | ||||| || || | Sbjct 249891 GGCCTCAGTACATGTTTATGCGCGTCTCAATAGGTATTCATGGTGAAGATGTGGACGCTG 249950 Query 363512 CGATTGAAACATATAAGCT----TCT---AAGTGCTCGTGTATTCACGCACGCCACGCCA 363564 | ||||| || || || || ||| ||||| | | |||||||| | | || Sbjct 249951 CTATTGAGACCTACAATCTAATGTCTGAAAAGTGGTTG---ATTCACGC----CTCACCC 250003 Query 363565 ACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATG 363624 || | | |||||||| || | | | || ||||||||| || ||| | || | |||| Sbjct 250004 ACTCTTTTTAATGCTGGGACGCCTTACCCTCAGATGTCTAGCTGTTTTTTGCTTACAATG 250063 Query 363625 AAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAG 363684 |||||||| ||||||||||| | |||||| || || | ||||| || || || || Sbjct 250064 AAGGACGACAGTATCGAGGGTATATATGACACGCTCAAACAATGTGCACTGATCTCGAAA 250123 Query 363685 AATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCG-TGCACAGAACAGTTACATT 363741 || || || || || | || || || || || | || ||| |||| | | ||| Sbjct 250124 AACGCGGGTGGGATCG--GTCTCAATGTTCACTGCATCCGAAGCA-AGAATACGTTTATT 250180 Query 363742 CGCGGCAC--AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 || || | |||| | || ||||| || || || |||||||| || || ||| | Sbjct 250181 GCTGGAACTAATGGGG--AGTCCAATGGTCTTGTACCGATGCTTCGGGTCTTCAACAGCA 250238 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCG 363859 | || | || ||||| ||||| || || || || || ||||| || ||||||| Sbjct 250239 CCGCTCGTTATGTCGATCAGGGAGGCAACAAACGACCCGGTGCCTTTGCCATCTATCTCG 250298 Query 363860 AGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGG 363919 | || ||| | ||| | | ||||| | ||| | ||||| ||||| || || | Sbjct 250299 AACCATGGCATCCGGATGTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCTGAAG 250358 Query 363920 AATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCG 363979 | | || || || ||||| ||| ||||||||| || | || | || |||||||| | Sbjct 250359 AGATTCGCGCTCGGGATCTCTTCCTCGCACTTTGGATTCCCGATCTATTCATGAAGCGAG 250418 Query 363980 TGGAGGCAGGTAAGAATTGGTCACTCTTTTG-CCCACACGAATGTCCAGGTCTTTCCGA- 364037 | |||||||||| ||| | || | | | ||| || || || || |||||| | || Sbjct 250419 TTGAGGCAGGTAGTTCGTGGAC-CTTTATGGACCCCCATGAGTGCCCCGGTCTTGCTGAC 250477 Query 364038 TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCG 364097 ||| ||||| || || | | || |||| ||||| || ||||| || | || || Sbjct 250478 TGT-TGGGGGGAGGAGTTCGAAATGCTTTACGCGAAGTACGAGTCGGAAGGTAGGGGCCG 250536 Query 364098 TAAGACAATTCCCGCACAG 364116 ||||| | || || ||| Sbjct 250537 CAAGACGCTGCCTGCTCAG 250555 Score = 87.8 bits (96), Expect = 5e-12 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 ||||| || ||||| | || | |||| |||| |||||||| ||||| |||||||||||| Sbjct 250653 CAGATCGAAACAGGCAATCCGTTTATGCTGTATAAAGATTCCTGCAATCGCAAGTCCAAC 250712 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || || ||||| || || || || ||||| || || |||||| | || |||| Sbjct 250713 CATCAACACCTAGGAACCATAAAGTGCTCGAACCTTTGCACTGAGATTGTCGAGTACA-- 250770 Query 364264 GCTC-CCGAC-GAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 |||| || || |||||||| || || || | || || || | ||||| Sbjct 250771 GCTCGCCTACAGAGACTGCTGTCTGCAATTTGGCTTCCATTTCTCTTCC 250819 >seq10 Length=2030774 Score = 91.5 bits (100), Expect = 4e-13 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA---TTCGCGGAACGT 22494 || ||||| |||||||| || | ||||| ||| || || | |||||| ||| Sbjct 443368 AAGAAGGCCGATTGGGCTCTTAGGTGGATTGCAAATAAAAAGGCACCGTACGCGGAGCGT 443309 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 || | || || |||| |||| ||| | ||||||||||| ||||| | | ||||| Sbjct 443308 CTGGTGGCGTTCGCTGCTATTGAGGGCGTATTCTTTTCTGGTTCATTTGCTTCCATCTTC 443249 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| || || |||| | ||||| || || || ||| || ||| | || || ||| Sbjct 443248 TGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCTTTAGTAACGAGCTGATCAGTCGA 443189 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTG 22643 ||||| || || || || |||||||| || Sbjct 443188 GATGAAGGCCTCCACACGGATTTTGCATG 443160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303293048635532