Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq32 100 2e-16 seq12 98.7 8e-16 seq3 96.9 3e-15 >seq32 Length=1043406 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| ||||| ||||| | || ||| | || ||||| || Sbjct 737852 TGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGC 737793 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || |||||| | || || || || |||||| || | |||||| ||||| ||| | | Sbjct 737792 TTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTC 737733 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||||| ||| ||| |||| || || || || ||||| Sbjct 737732 GCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTT 737673 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| |||||||| ||||| Sbjct 737672 AGAGTTTTCACAAAAATTTGCAT 737650 Score = 100 bits (110), Expect = 2e-16 Identities = 185/267 (69%), Gaps = 12/267 (4%) Strand=Plus/Minus Query 16672 TTTATTTTAAAATGTATTATTGTTTAGCCGCATTTACCCTCCTCGTAGCCTCAGTACCAT 16731 ||||||||||| || ||||| | ||| | | ||||| || || | || || | Sbjct 749269 TTTATTTTAAA---TAA-ATTGTGT----GCAATCAGCCTCCACGAAGACGAAGCACAAG 749218 Query 16732 ATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTG 16791 || || |||||||||||||| ||||||||||| | | ||| | | || ||||| || Sbjct 749217 GTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAACTG 749158 Query 16792 TTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATT 16849 ||||| || | || | || || ||||| ||| | |||||| ||||| || || Sbjct 749157 CTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTT 749098 Query 16850 TGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCG 16909 ||| |||||| | | | | ||| | ||||||| |||| ||||| ||||| ||| Sbjct 749097 TGC--CTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCG 749040 Query 16910 GTCAGCGTTTTGACAAAAATCTGCATT 16936 || || || || || || ||||||||| Sbjct 749039 GTTAGAGTCTTCACGAAGATCTGCATT 749013 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || ||||| ||||||||||| ||||||||||||| | || |||||||||| ||| Sbjct 731349 TGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCCAACTGT 731408 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || | ||||| || ||| || | ||||||||||| ||| | Sbjct 731409 TTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTG 731468 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | || | ||||| || | |||||| || || ||||| Sbjct 731469 GCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTA 731528 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||| || ||||| || ||||| Sbjct 731529 AGCGTCTTCACAAAGATTTGCAT 731551 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| ||||| ||||||||||| ||||||||||||| | || | | || Sbjct 738089 AGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCT 738030 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| || || ||| | || | ||||| ||||| || | |||||| || || Sbjct 738029 TCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTATCT 737970 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | ||| || | | | | |||| ||| || ||| | || ||||| Sbjct 737969 TGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTC 737910 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || ||||||||||||||||| Sbjct 737909 TTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| || ||||| ||||| || || ||||||||||| | | || | || Sbjct 738774 CAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGACCATC 738715 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||||| || || || || | || | || || ||||| || | |||||| ||||| Sbjct 738714 CTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTC 738655 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 || | | |||||| | | | | ||| | ||||||| |||| ||||||||| Sbjct 738654 CTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCCACCTCCAAGGTGATGGT 738595 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || ||||| ||||| |||||||| Sbjct 738594 CTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 738562 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || ||||| ||||||||||| ||||||||||||| | || |||||||||| ||| Sbjct 739220 TGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCCAACTGT 739161 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || | ||||| || ||| || | ||||||||||| ||| | Sbjct 739160 TTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTG 739101 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | || | ||||| || | |||||| || || ||||| Sbjct 739100 GCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTA 739041 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| Sbjct 739040 AGAGTCTTTACGAAGATCTGCAT 739018 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || ||||| ||||| || || ||||||||||||| || || | ||| Sbjct 731112 AGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAACGTGCGACCATCC 731171 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || || || ||| | || | || || |||||| || | |||||| ||||| Sbjct 731172 TCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCC 731231 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | |||||| | | | | ||| | |||||| |||| || || || Sbjct 731232 TGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAACGTAATTGTC 731291 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| || ||||| |||||||| Sbjct 731292 TTCCCAGTCAGCGTCTTCACAAATATCTGCAT 731323 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || ||||| ||||| || || ||||||||||||| || || | ||| Sbjct 739457 AGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAACGTGCGACCATCC 739398 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || || || ||| | || | || || |||||| || | |||||| ||||| Sbjct 739397 TCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCC 739338 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | |||||| | | | | ||| | |||||| |||| || || || Sbjct 739337 TGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAACGTAATTGTC 739278 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| || ||||| |||||||| Sbjct 739277 TTCCCAGTCAGCGTCTTCACAAATATCTGCAT 739246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||| |||||||| ||||||||||| | || ||| | || Sbjct 748769 AGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCT 748710 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || || |||||| | || || || || || || || | |||||| ||||| Sbjct 748709 TCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCC 748650 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| |||||| | | | | ||| | ||||||| |||| ||||| | Sbjct 748649 TGAATCTTTGC--CTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTG 748592 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||| || || || || || ||||| Sbjct 748591 TTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 748558 >seq12 Length=1725783 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||||||| || || || | ||| || || ||||||||||| || || ||||||| Sbjct 1077049 CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAG 1076990 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || |||||||||| || || || || | |||||||| ||||| || || Sbjct 1076989 AGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGT 1076930 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || |||||| || || | | | | || | ||||| Sbjct 1076929 ATTCCCTCTTTGTCTTGGATTTTTGCT--TTTACGTTCTCAATGGAATCACTTGGCTCAA 1076872 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||| ||||||||||| || || || || |||||||| |||||| Sbjct 1076871 CCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 1076822 >seq3 Length=2943993 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || || ||||| || | | || | ||||||||||| Sbjct 307579 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGC 307638 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| ||||||| ||||||||||| || | ||||| ||||| ||| | Sbjct 307639 TTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTA 307698 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | || ||| |||||| || | ||||| ||||| ||||| Sbjct 307699 GCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTA 307758 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| |||||||||||||| Sbjct 307759 AGAGTTTTCACAAAAATCTGCAT 307781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405070098401740