Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq10 266 4e-66 seq25 214 2e-50 >seq10 Length=2030774 Score = 266 bits (294), Expect = 4e-66 Identities = 519/756 (69%), Gaps = 23/756 (3%) Strand=Plus/Plus Query 32531 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 32590 ||||||||| || ||||| | || || || || | ||||||||||| ||||||| Sbjct 443030 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 443089 Query 32591 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGG--TGGATACAATAAAT 32646 |||||| || | || || || || | |||| | | || || |||||| | Sbjct 443090 GACCGCCTCCCTCATGATG--TCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATA--T 443145 Query 32647 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 32706 ||||||| || | ||||| ||||| ||| || || || |||| ||| || | |||| Sbjct 443146 GTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGT 443205 Query 32707 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 32766 | ||| ||||| || ||||| || |||||||| || ||||| || ||||| ||||||| Sbjct 443206 TACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATG 443265 Query 32767 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 32826 | ||||||||||| | || || | || || || || | || | ||| | || ||| Sbjct 443266 AACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTA--CGG 443323 Query 32827 CGC--TGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881 || | | || | |||||| | ||||||||||||||||||| ||||| |||| Sbjct 443324 TGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAA 443383 Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCA 32939 || | || || ||||| ||| ||| ||| ||| ||| || || || |||||| Sbjct 443384 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTC--TACCGGATCCTTTACGTAGGTATCA 443441 Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 |||| |||| |||||||| |||||||||||||| | ||| | ||| | ||| || || Sbjct 443442 ATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAA 443501 Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCA 33057 || | |||||||| ||| || || || ||||||| ||| | || ||||||||| | Sbjct 443502 CAACGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAA 443559 Query 33058 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 33117 | || || |||||||| || || || ||||| |||| || || | ||| | Sbjct 443560 CGATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCAT 443619 Query 33118 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 33177 | || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| | Sbjct 443620 CATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGA 443679 Query 33178 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 33237 | || || | || || || || | | ||| || ||||| ||||| || || | | || Sbjct 443680 AAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAA 443739 Query 33238 CAAATCTATTTGGATTTTTTGCAAGGATTGGTTCCA 33273 | ||||| ||||| |||| || ||||||| Sbjct 443740 CGAATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 443775 >seq25 Length=1211561 Score = 214 bits (236), Expect = 2e-50 Identities = 419/615 (68%), Gaps = 6/615 (1%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||||||||| || |||||| | | || || || || |||| || ||| || | Sbjct 250498 TTCGAACTCCTCCCCCCAACAGTCAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGGT 250439 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 |||| | | ||| ||||| ||||| || ||||| ||||||||||| || | || Sbjct 250438 CCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAA 250379 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 ||||| | | | | || || || || ||||| | || | ||| || Sbjct 250378 GAGATCCCGAGCGCGAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAG 250319 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | ||| | |||||| ||||| | || ||||| | | || || |||||||| ||||| Sbjct 250318 TACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCC 250259 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 |||||| | || | ||||||| | || | || | | ||| || | || ||||||||| Sbjct 250258 CTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGA 250199 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCA-CGAAT--ATTACTAATTGATAG 63348 ||||| || || | ||| | | | || || || || | | ||||| | Sbjct 250198 CTCCCCATTAGTTCCAGCAATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--G 250142 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 ||| || || || || |||| ||||| | ||| ||| |||| | ||| ||||| || || Sbjct 250141 ACCGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACC 250082 Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468 ||| ||||| || ||| |||| |||| | ||||||||||||||| || | | || Sbjct 250081 CTCGATACTGTCGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGT 250022 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 || |||||||| | || || || |||||| | ||||| |||||||| | ||||||||| Sbjct 250021 CCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTA 249962 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 ||||||||||| | ||| | ||| |||||| |||| || ||| ||||| ||||| Sbjct 249961 GGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACAT 249902 Query 63589 GTGCTGAGGTCTTTC 63603 || |||||| || || Sbjct 249901 GTACTGAGGCCTCTC 249887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633603280629600