Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq32 125 6e-24 seq3 116 3e-21 seq12 114 1e-20 >seq32 Length=1043406 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || ||| | |||||| | || |||||| | | Sbjct 748558 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 748617 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | || ||| |||| ||||| | ||| ||||| || || |||||||| || || Sbjct 748618 GACTCGATAGAGAATGTGAAGGCAAAGATTCA-GGACAAGGAGGGCATTCCACCAGATCA 748676 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || ||||| || || || || ||||||| |||||| || || ||||| Sbjct 748677 GCAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAA 748736 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| |||||||| || ||| | ||||| Sbjct 748737 CATCCAAAAGGAATCCACTCTTCATCTTGTGCT 748769 >seq3 Length=2943993 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | ||||| ||| | ||||| | || || ||| | || Sbjct 307781 ATGCAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCCCTCC 307722 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||| ||| ||||| | || | ||| ||||| || ||||||||||| ||||| Sbjct 307721 GATTCTATTGAGAATGTGAAGGCTAAGATTCAA-GACAAGGAGGGGATTCCACCAGACCA 307663 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| |||||||||| ||||| ||||| || |||| || | | |||||||| Sbjct 307662 ACAGCGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAA 307603 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || || || || | ||||| Sbjct 307602 TATTCAGAAGGAGTCAACCCTTCACCTTGTGCT 307570 >seq12 Length=1725783 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| ||||| |||||| | || || ||| |||| || | || || ||| | Sbjct 1076819 AATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCC 1076878 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| | || ||| | || ||||||| |||||||| || || ||||| || Sbjct 1076879 AAGTGATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGA 1076938 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| ||| |||| || ||||| || || || || || | || ||| | ||| || Sbjct 1076939 TCAACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTA 1076998 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| || || || || ||| | || ||||| ||| ||||||| Sbjct 1076999 TAATATTCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACTACGAGGAGG 1077049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433308850423190