Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10 197 2e-45 >seq10 Length=2030774 Score = 197 bits (218), Expect = 2e-45 Identities = 487/730 (67%), Gaps = 14/730 (2%) Strand=Plus/Plus Query 92941 TATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGT 93000 ||| |||||| |||| || ||||||||| || | |||| ||||| || ||||| || Sbjct 443009 TATATACTGACACATTAAGCGACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGT 443068 Query 93001 CAAGAAAT---CTTTCTCGATTACA-ACGGCTTCTTTCAAGATTTCTATTACTCTACTAT 93056 ||||||| | ||| | ||| || || || ||| ||| || || | | || | Sbjct 443069 -AAGAAATTCGCATTC---AATACTGACCGCCTCCCTCATGATGTC-ATAAACC--CTTT 443121 Query 93057 TTG--GT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAAC 93113 | || || || | || | || || | || | ||| ||||| || || || | | Sbjct 443122 CCGCCGTAGGCTTGTTGACAATATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGC 443181 Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||| ||||| |||| ||| || || || || | || || | || || || |||| Sbjct 443182 CTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCT 443241 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 ||||||| || || |||||||| ||||||||| |||| || || | || || || | Sbjct 443242 TGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACG 443301 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 |||| | ||| || || | ||| ||| | ||||| | | ||||||||||| Sbjct 443302 CCACCAGACGCTCCGCGTACGGTGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGG 443361 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCG 93353 | || || || ||| || | |||| || |||||||| || | || || || ||| Sbjct 443362 CCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCG 443421 Query 93354 AATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTG 93413 ||| || ||| ||||| || | ||||| |||||||||||||| | || || | | Sbjct 443422 GATCCTTTACGTAGGTATCAATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGG 443481 Query 93414 CAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCT 93473 | | ||| | ||| || ||||| | ||| || | || || || || | | |||| || Sbjct 443482 CGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCA 443541 Query 93474 CTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTA 93533 ||||||||||| || || ||||| || || || |||||||| | || | | Sbjct 443542 AAGTTAGATTTTCATTAACGATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAA 443601 Query 93534 TAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGA 93593 | || || ||| |||| ||||| | ||||| || | ||||| || | | ||| | Sbjct 443602 TGAAGTGACGCTCGCCATCATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAA 443661 Query 93594 CTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGAT 93653 |||| || || ||||| || || || | ||||| ||||| | ||||| || || || | Sbjct 443662 CTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGT 443721 Query 93654 ATTGAATTGG 93663 |||| || || Sbjct 443722 ATTGGATGGG 443731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556835560284240