Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq32 95.1 1e-14 seq12 95.1 1e-14 >seq32 Length=1043406 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| | |||||||| || ||||| |||| |||||||||| Sbjct 737650 ATGCAAATTTTTGTGAAAACTCTAACCGGCAAGACAATTACGCTGGAGGTGGAACCCAGC 737709 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || || ||| ||||| || ||| |||| || || Sbjct 737710 GACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 737769 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || || | |||||| || || ||||||||| | || || | || ||||| Sbjct 737770 CAACGTCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAAC 737829 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || || | ||| | || || || ||||| Sbjct 737830 ATTCAAAAGGAGTCAACCCTCCACCTTGTGCTCCGACTTCGTGGTGG 737876 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||||||||| || | |||||||| ||||| || | ||| ||||||||| Sbjct 737878 ATGCAGATTTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAGC 737937 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||||| ||| | ||||| || || || || || ||| |||| || || Sbjct 737938 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG 737997 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | || | ||| || || |||||||||||| ||| | |||| || || Sbjct 737998 CAGCGTTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCCGACTACAAC 738057 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || ||||| || || || || ||| | ||| | || || || ||||||| Sbjct 738058 ATTCAAAAGGAGTCAACGCTTCATCTTGTGCTACGACTTCGTGGTGGCA 738106 >seq12 Length=1725783 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 || ||||||||||||||| || || | || || |||||||| ||| | || || || Sbjct 1076819 AATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCC 1076878 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 || ||||| ||| | |||||| |||||| |||||||| || | || || Sbjct 1076879 AAGTGATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGA 1076938 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 ||||||| ||||||| | || || || || ||||| || ||| | |||| || Sbjct 1076939 TCAACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTA 1076998 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAATA 111422 |||||| ||||| || || ||||| ||| | || | | || || || |||| ||||| Sbjct 1076999 TAATATTCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACTACGAGGAGGCATGAAATA 1077058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423021305069200