Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq32 147 2e-30 seq3 145 6e-30 seq12 134 1e-26 >seq32 Length=1043406 Score = 147 bits (162), Expect = 2e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||||||||| |||||| ||||||| || || | || || || |||||| ||| Sbjct 737649 GATGCAAATTTTTGTGAAAACTCTAACCGGCAAGACAATTACGCTGGAGGTGGAACCCAG 737708 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || || | || || ||||||||||||||||| |||||||| || || Sbjct 737709 CGACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCA 737768 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||||||| || ||||| || || ||||| || ||| |||||| | || || || || Sbjct 737769 GCAACGTCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAA 737828 Query 22398 CATTCAAAAAGAATCCACC 22416 ||||||||| || || ||| Sbjct 737829 CATTCAAAAGGAGTCAACC 737847 Score = 132 bits (146), Expect = 4e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || || ||||| || || ||||| |||| || || ||||| ||| Sbjct 748557 GATGCAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGAGCCCAG 748616 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || | | || || | || ||| ||||| ||||||||||| |||||||| ||||| Sbjct 748617 TGACTCGATAGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCA 748676 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||| || || ||||| || || ||||| || ||| |||||| | || || ||||| Sbjct 748677 GCAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAA 748736 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| ||||| |||||||| Sbjct 748737 CATCCAAAAGGAATCCAC 748754 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| || ||| ||||||| || || | || || ||||| ||| ||| Sbjct 737877 GATGCAGATTTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAG 737936 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||| | | || | | || || || ||||| |||||||| |||||||| || || Sbjct 737937 CGATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAGACCA 737996 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || ||| | || ||||| || || || || || ||| |||||| | ||||| ||||| Sbjct 737997 GCAGCGTTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCCGACTACAA 738056 Query 22398 CATTCAAAAAGAATCCAC 22415 ||||||||| || || || Sbjct 738057 CATTCAAAAGGAGTCAAC 738074 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || || |||| || || || || | | Sbjct 731551 ATGCAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 731492 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | || || ||||||||||| |||||||| ||||| ||||| Sbjct 731491 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCAG 731432 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||||||||| ||||| || || | ||||| |||||| Sbjct 731431 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCGGACTCTTTCCGACTACAAC 731372 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 731371 ATTCAAAAGGAGTCAAC 731355 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | || || ||||||||| | | | Sbjct 738790 ATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAGC 738849 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || ||||| || |||||||||||||| || ||||| Sbjct 738850 GACACAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCGCCTGATCAG 738909 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || ||||| ||||| |||||| || ||| | || || |||||| Sbjct 738910 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCAGACTACAAC 738969 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || ||||| ||| Sbjct 738970 ATTCAGAAGGAATCGACC 738987 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| ||||||| ||||| |||| || || ||||| ||| Sbjct 749014 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 749073 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | | || ||| || || ||||||||||| ||||| || || || Sbjct 749074 GACTCGATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAG 749133 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || ||||| ||||| || ||| ||||||| | || || |||||| Sbjct 749134 CAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTATCTGACTACAAC 749193 Query 22399 ATTCAAAAAGAATCCACC 22416 || ||||| || |||||| Sbjct 749194 ATCCAAAAGGAGTCCACC 749211 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || |||| || || || || | | Sbjct 739018 ATGCAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 739077 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | || || ||||||||||| |||||||| ||||| ||||| Sbjct 739078 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCAG 739137 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||||||||| ||||| || || | ||||| |||||| Sbjct 739138 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCGGACTCTTTCCGACTACAAC 739197 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 739198 ATTCAAAAGGAGTCAAC 739214 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| ||||||| || || | || || ||||| ||| ||| Sbjct 738334 ATGCAGATCTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAGT 738393 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || | | || || || ||||| |||||||| ||||| || |||||| Sbjct 738394 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCGCCAGATCAA 738453 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || ||||| || || ||||| | || ||||||||| Sbjct 738454 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTGATTACAAC 738513 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || || | ||| | || | ||| | || || ||| Sbjct 738514 ATTCAAAAGGAGTCAACGCTTCATCTCGTGCTTCGACTCCGTGGTGGT 738561 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| ||||||| || || | || || ||||| ||| ||| Sbjct 738106 ATGCAGATCTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAGT 738165 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || | | || || || ||||| ||||| || |||||||| || || Sbjct 738166 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAAGGCATTCCACCAGACCAG 738225 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || || || || ||| |||||| | ||||| |||||| Sbjct 738226 CAGCGTTTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCCGACTACAAC 738285 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 738286 ATTCAAAAGGAGTCAAC 738302 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||||||||| | ||||| || || |||| | || ||||| ||| Sbjct 738562 ATGCAGATATTTGTTAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 738621 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | | || || || || ||||||||||| |||||||| || || Sbjct 738622 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCAGACCAG 738681 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || || ||||| |||||| || || | || || |||||| Sbjct 738682 CAACGATTGATCTTCGCAGGAAAGCAGTTGGAGGATGGTCGTACTCTATCTGACTACAAC 738741 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||| || || | || || || |||| ||||| || || Sbjct 738742 ATTCAGAAAGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 738788 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || |||| || || || || | | Sbjct 739474 ATGCAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 739533 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | || || ||||||||||| ||||| || || || || ||| Sbjct 739534 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCAGACCAA 739593 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || ||||| ||||| || ||| ||||| | ||||| |||||| Sbjct 739594 CAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAAC 739653 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || ||||| ||| Sbjct 739654 ATTCAGAAGGAATCGACC 739671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || |||| || || || || | | Sbjct 731095 ATGCAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 731036 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || | | || ||| || || ||||||||||| || || || || ||| Sbjct 731035 GATTCGATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAA 730976 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || ||||| ||||| || ||| ||||| | ||||| |||||| Sbjct 730975 CAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAAC 730916 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || ||||| ||| Sbjct 730915 ATCCAGAAGGAATCGACC 730898 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || ||||| || || ||||| | || ||||| || || Sbjct 731239 AAGATCCAGGACAAGGAGGGCATCCCACCGGACCAGCAACGATTGATCTTTGCAGGAAAG 731180 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||||| |||||| ||||| | ||||| |||||||| || ||||| || || Sbjct 731179 CAGTTGGAGGATGGTCGCACGTTGTCCGACTACAACATCCAGAAAGAGTCGAC 731127 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || ||||| || || ||||| | || ||||| || || Sbjct 739330 AAGATCCAGGACAAGGAGGGCATCCCACCGGACCAGCAACGATTGATCTTTGCAGGAAAG 739389 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||||| |||||| ||||| | ||||| |||||||| || ||||| || || Sbjct 739390 CAGTTGGAGGATGGTCGCACGTTGTCCGACTACAACATCCAGAAAGAGTCGAC 739442 >seq3 Length=2943993 Score = 145 bits (160), Expect = 6e-30 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| |||||| | ||||| ||||| |||||||||| || || || || Sbjct 307781 ATGCAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCCCTCC 307722 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | || || ||||||||||||||||| |||||||| || ||| Sbjct 307721 GATTCTATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAA 307662 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| ||||| || || |||||| || || | || |||||||| Sbjct 307661 CAGCGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAAT 307602 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 307601 ATTCAGAAGGAGTCAACC 307584 >seq12 Length=1725783 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | || || ||||| | || ||||| || || | | Sbjct 1076823 ATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAGT 1076882 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | || | | ||| |||||| |||||||| ||||| || ||||| |||||| Sbjct 1076883 GATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCAA 1076942 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||| || ||||| || ||||| ||||| || || ||||||| || || Sbjct 1076943 CAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTATAAT 1077002 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || || | ||| | ||| | || | || ||||| Sbjct 1077003 ATTCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACTACGAGGAGG 1077049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419709451432690