Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq32 100 2e-16 seq3 84.2 2e-11 >seq32 Length=1043406 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||| || |||||||| |||||| ||||||||||| || | Sbjct 731325 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTC-GGA 731383 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| ||||| || ||||| ||||| |||| |||||||||||| || Sbjct 731384 AAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGG 731443 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACT---ATCAGTAGATTC 34076 | | ||||||||| ||| || ||| | | || || | |||| ||| || Sbjct 731444 GATACCCTCTTTGTCTTGAATCTTGGCCTTCA---CATTCTCAATCGAATCACTAGGCTC 731500 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || ||||||||||||||||| Sbjct 731501 AACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 731551 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || ||||| ||||||||||| |||||| |||||||||||||| | | | || || Sbjct 738551 AGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTG-CG 738493 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| ||||| ||||| || || || |||| ||||| ||||| ||| | || ||| Sbjct 738492 ACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTC 738433 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCG 34087 || || || || ||| | | |||| | |||| | | ||| ||| | || Sbjct 738432 CTTATCTTGGATCTTCGCCTTTA-CGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCG 738374 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || |||||||| || || |||||||| ||||| Sbjct 738373 TTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738334 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||| || |||||||| |||||| ||||||||||| || | Sbjct 739244 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA- 739186 Query 33961 AATTGTC-GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | |||| ||||| || ||||| ||||| |||| |||||||||||| || Sbjct 739185 AAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGG 739126 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACT---ATCAGTAGATTC 34076 | | ||||||||| ||| || ||| | | || || | |||| ||| || Sbjct 739125 GATACCCTCTTTGTCTTGAATCTTGGCCTTCA---CATTCTCAATCGAATCACTAGGCTC 739069 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || || || ||||| ||||| Sbjct 739068 AACCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739018 >seq3 Length=2943993 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/227 (68%), Gaps = 18/227 (8%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || ||||| || |||||||||||| |||||||| | || || Sbjct 307564 AGGCGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGT 307623 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||||||||||||| ||||| || || ||||| || || || | | ||| Sbjct 307624 CCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCC 307683 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA---TTCGACC 34086 ||||| ||| |||| | ||||| | ||| |||| ||| | |||||| Sbjct 307684 TTGTCTTGAAT------CTTA---GCCTTCACATTCTCAATAGAATCGGAGGGCTCGACC 307734 Query 34087 ------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||||| ||||| || ||||||||||| || ||||| Sbjct 307735 TCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 307781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397044853068052