Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq32 172 1e-37 seq12 145 2e-29 seq3 98.7 2e-15 >seq32 Length=1043406 Score = 172 bits (190), Expect = 1e-37 Identities = 177/230 (77%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| ||| |||||||||| ||| || ||||| || || || || | Sbjct 738560 CCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAA 738501 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| || || || || ||||| |||| |||||||||| ||||| Sbjct 738500 AGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGA---TCTGGC 738444 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||| ||||| ||||| || ||||| || || ||||| || | ||| Sbjct 738443 GGAATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCA 738384 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || ||||| ||||| ||||||||||| || |||||||| Sbjct 738383 ACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738334 Score = 167 bits (184), Expect = 6e-36 Identities = 177/232 (76%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || |||| || || ||||||| ||| || ||||| || || |||| Sbjct 738108 CATG-CCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGT 738050 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| || ||||| ||||| || || || ||||||| |||||| || Sbjct 738049 CGGAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTG 737990 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| || || || ||||| ||||| ||||| || ||||| || || |||||||| | || Sbjct 737989 GTGGAATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTT 737930 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| ||||| || ||||| ||||| ||||||||||| || |||||||| Sbjct 737929 CAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 Score = 167 bits (184), Expect = 6e-36 Identities = 177/232 (76%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || |||| || || ||||||| ||| || ||||| || || |||| Sbjct 738336 CATG-CCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGT 738278 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| || ||||| ||||| || || || ||||||| |||||| || Sbjct 738277 CGGAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTG 738218 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| || ||||| ||||| ||||| ||||| || ||||| || || ||||| || | || Sbjct 738217 GTGGAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTT 738158 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| ||||| || ||||| ||||| ||||||||||| || |||||||| Sbjct 738157 CAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738106 Score = 154 bits (170), Expect = 3e-32 Identities = 174/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || || |||| ||| || ||||| || || |||| Sbjct 739248 CATG-CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGT 739190 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || || ||||| || || ||||| || || ||||||| |||||| ||| Sbjct 739189 CGGAAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCG 739130 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| || ||||| || || || || || ||||| || || || ||||| || | | Sbjct 739129 GTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCT 739070 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct 739069 CAACCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739018 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || || |||| || ||| || ||||| || ||||||| Sbjct 730869 CCGCCACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAC 730928 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| || || || || |||||||||| || ||||| |||||| Sbjct 730929 AATGTGCGACCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGG---TCTGGG 730985 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || || |||||||| || || ||||| || | || Sbjct 730986 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCAATCGAATCACTAGGCTCA 731045 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct 731046 ACCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 731095 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | |||| ||| ||||| ||||| || ||||||| Sbjct 731097 CCACCACGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGAC 731156 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||| || || || || || |||||||| ||||||| || || || |||| Sbjct 731157 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 731216 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| ||||| || || || | || || Sbjct 731217 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACC 731276 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||| || |||||||| ||||| ||||| || ||||||||||| Sbjct 731277 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCAT 731323 Score = 143 bits (158), Expect = 6e-29 Identities = 174/236 (74%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || || |||| ||| || ||||| || || |||| Sbjct 731321 CATG-CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGT 731379 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || || ||||| || || ||||| || || ||||||| |||||| ||| Sbjct 731380 CGGAAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCG 731439 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| || ||||| || || || || || ||||| || || || ||||| || | | Sbjct 731440 GTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCT 731499 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | || ||||| ||||| ||||||||||| || ||||| || || || ||||| ||| Sbjct 731500 CAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCATGATG 731555 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | |||| ||| ||||| ||||| || ||||||| Sbjct 739472 CCACCACGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGAC 739413 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||| || || || || || |||||||| ||||||| || || || |||| Sbjct 739412 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 739353 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| ||||| || || || | || || Sbjct 739352 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACC 739293 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||| || |||||||| ||||| ||||| || ||||||||||| Sbjct 739292 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCAT 739246 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || || |||| || ||| || || || || ||||||| Sbjct 739700 CCCCCACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAC 739641 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| || || || || |||||||||| || ||||| |||||| Sbjct 739640 AATGTGCGACCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGG---TCTGGG 739584 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| || || || || || ||||| || || || ||||| || | || Sbjct 739583 GGGATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCA 739524 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct 739523 ACCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739474 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || ||||| | || || || || || || || || |||||||||||| Sbjct 738752 TCTTTCTGAATGTTGTAGTCAGATAGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAG 738693 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || || || ||| || || || || |||||||| ||||| |||||||| Sbjct 738692 ATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 738633 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||| || || || | || || || | ||||| ||||| ||||| || || || || Sbjct 738632 TCTATCGAGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACA 738573 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 738572 AATATCTGCAT 738562 >seq12 Length=1725783 Score = 145 bits (160), Expect = 2e-29 Identities = 174/235 (74%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || ||||| || || ||||| | || || ||||| |||||||||| Sbjct 1077053 CATG-CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGT 1076995 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| || || ||||| || || || || || |||||||| || || |||||| Sbjct 1076994 CGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTG 1076935 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| ||||| ||||| || |||||||| ||||| ||||| || || ||||| || | | Sbjct 1076934 GTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGCT 1076875 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 | || || || || || || || || || |||||||| || || || |||||||| Sbjct 1076874 CAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATTAT 1076820 >seq3 Length=2943993 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || |||| || || || || ||||| || || | Sbjct 307555 CCACCACGGAGGCGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGAT 307614 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | | ||||| || || ||||| || || || || || ||||||||||| ||| Sbjct 307615 AAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGA 307674 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || || || || || ||||| || || ||||||||| | || || Sbjct 307675 ATCCCCTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACC 307734 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || ||||| ||||| || || || |||||||| Sbjct 307735 TCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 307781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179599595468428