Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq32 141 9e-29 seq12 114 1e-20 seq25 84.2 2e-11 >seq32 Length=1043406 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || |||||| ||||||| ||| || || ||||||||||||||||| | Sbjct 738561 ACCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGA 738502 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||| | |||||| || || |||| | ||||| || || || || Sbjct 738501 AAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGG 738442 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || ||||| || || |||||| ||| | | ||||| || || || Sbjct 738441 AATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAAC 738382 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| |||||||||||| | ||| || || || || ||||| Sbjct 738381 TTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738334 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||||| ||| || || |||||||||||||| || | | ||||| | ||| Sbjct 738317 AGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCT 738258 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| || ||| | || | ||||||||||| || ||||| ||||| || ||| Sbjct 738257 TCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCT 738198 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || |||||| ||| | | ||||| || || ||||||| |||| |||| Sbjct 738197 TGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTC 738138 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | ||| || || || || ||||| Sbjct 738137 TTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738106 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||||| ||| || || |||||||||||||| || | | ||||| | ||| Sbjct 738089 AGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCT 738030 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| || ||| | || | ||||||||||| || ||||| || || || ||| Sbjct 738029 TCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTATCT 737970 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || |||||| ||| | | ||| | || || ||||||| |||| |||| Sbjct 737969 TGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTC 737910 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | ||| || || ||||| ||||| Sbjct 737909 TTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || ||||||||||| || || | | |||||| | ||| Sbjct 737861 AGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCT 737802 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| || ||| | || || || |||||||| || ||||| || || || ||| Sbjct 737801 TCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCT 737742 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||| || | || ||||| || | || | ||| Sbjct 737741 TGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTC 737682 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | |||||| || ||||||||||| Sbjct 737681 TTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 737650 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| || |||| |||||||| || ||||||||||| |||| Sbjct 739017 ACCACCACGCAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGA 738958 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || || | ||||||||| || | || | |||||||| || || || Sbjct 738957 TAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGG 738898 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| ||| ||| | ||| || | | ||||| Sbjct 738897 AATACCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCAC 738838 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||| || |||| || || ||||| |||||||| Sbjct 738837 TTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCACGAATATTTGCAT 738790 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | ||||||||| |||| ||| || || |||||||||||||| || | Sbjct 739244 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 739185 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || | ||| ||||| ||| | || | |||||||| || || || Sbjct 739184 AGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 739125 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| ||||| || || ||| ||| ||| | | ||||| | || || Sbjct 739124 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 739065 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| ||||| | ||| |||||||| || ||||| Sbjct 739064 TCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739018 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || |||| |||||||| || ||||||||||| || | | ||||| | || Sbjct 739686 AAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATC 739627 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||||||| || | || | || || ||||| || || || || ||||| || Sbjct 739626 TTCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGGATGCCCTCTTTGTC 739567 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| ||| ||| | | ||||| | || || || | || | || Sbjct 739566 TTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGT 739507 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||| | ||| |||||||| || ||||| Sbjct 739506 CTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739474 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | ||||||||| |||| ||| || || |||||||||||||| || | Sbjct 731325 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 731384 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || | ||| ||||| ||| | || | |||||||| || || || Sbjct 731385 AGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 731444 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| ||||| || || ||| ||| ||| | | ||||| | || || Sbjct 731445 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 731504 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| ||||| | || || || || |||||||| Sbjct 731505 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 731551 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | ||||| | |||| |||||| ||||| ||||||||||| || | Sbjct 738788 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGAT 738729 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || | |||||| || || | || | || |||||||| || ||| Sbjct 738728 AGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 738669 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | | |||| || ||||| Sbjct 738668 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCCACC 738609 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | ||||| || || || ||||| Sbjct 738608 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 738562 >seq12 Length=1725783 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| || || ||||| | ||||| || |||||||| || || || | | Sbjct 1077049 CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAG 1076990 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || ||| |||| || | |||||| ||||| | || ||||| || || || || || Sbjct 1076989 AGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGT 1076930 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| ||||| ||||| |||||| ||||| ||| | | ||||| | || || Sbjct 1076929 ATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGCTCAACC 1076870 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | |||| ||| || || || | ||| || || |||||||||||| Sbjct 1076869 TCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 1076822 >seq25 Length=1211561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 170/250 (68%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 153689 GATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCGGTTTTCAAACCACGTTT 153748 ||| | ||| || || || |||| |||| ||||||||| || ||||| | ||||| || Sbjct 251866 GATGGGATCGGCAGCAGGCCTAGTGCGCAGATAATACATCCCCGTTTTGAGTCCACGCTT 251807 Query 153749 CCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGCTGCGCTATAAACACGTT 153808 ||| | || | |||| || || | | || | |||||| | || ||| ||| Sbjct 251806 CCAGGCGTAGAAATGCATACTCGTGATTTTACCGTAGTTGGGCTCCTTCATGTACAGGTT 251747 Query 153809 AAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAG---TT 153865 || ||||||||||| || ||||| | | ||||| || |||| |||| || || Sbjct 251746 AAGAGACTGGCTCTGGTCAATGAACGGAGCACGATCAGCTGCCA----AATCGAGTATTT 251691 Query 153866 TTTACT-GCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGAT 153924 ||| || | || ||||| || |||||||||| || || ||||| || || | | | Sbjct 251690 TTTTCTGGGGTATCTCCCAAACTGTTTTGTAGAGAGCCTTGATGTCTTCTGGAACTCCGT 251631 Query 153925 CAATTTTCTG 153934 |||| | ||| Sbjct 251630 CAATATCCTG 251621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499622153599440