Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq12 111 2e-19 seq32 100 3e-16 >seq12 Length=1725783 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| || |||||| | ||| ||| |||||| | || ||||||| Sbjct 1077016 GACTCCTTTTGAATATTATAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCG 1076957 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || || ||||| || || ||||| || |||||||| ||||||| ||||| Sbjct 1076956 AAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACG 1076897 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | | ||| ||||| | || | ||||| ||||| ||||| || Sbjct 1076896 TTCTCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTA 1076837 Query 138601 ACAAAAATCTGCAT 138614 |||||||| ||||| Sbjct 1076836 ACAAAAATTTGCAT 1076823 >seq32 Length=1043406 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | |||| || | |||||||||||||||||||||||||| Sbjct 739245 GCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA 739186 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || |||||| | ||||| || | | |||| | |||||| || ||||| || Sbjct 739185 AAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGG 739126 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| |||||||| ||| | || | || | | || | | || | | ||| | Sbjct 739125 GATACCCTCTTTGTC-TTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAA 739067 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || || || ||||| ||||| || |||||||| Sbjct 739066 CCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739018 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | |||| || | |||||||||||||||||||||||||| Sbjct 731324 GCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA 731383 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || |||||| | ||||| || | | |||| | |||||| || ||||| || Sbjct 731384 AAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGG 731443 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| |||||||| ||| | || | || | | || | | || | | ||| | Sbjct 731444 GATACCCTCTTTGTC-TTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAA 731502 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||||| || | || || || || || || || ||||| || |||||| Sbjct 731503 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCATG 731552 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||||||||| ||||| || || || || || | || || || | Sbjct 737845 TTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCG 737786 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 | |||||||||| || |||||||| || || || || ||||| ||| | || | || Sbjct 737785 CAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTC-TTGAATCTTCGCCTTC 737727 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | |||||| | | |||||||| | ||| | || || || || |||||| Sbjct 737726 ACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTT 737667 Query 138598 TTTACAAAAATCTGCAT 138614 || |||||||| ||||| Sbjct 737666 TTCACAAAAATTTGCAT 737650 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||||||||||||||||||| | ||| || || || | ||| ||||| | Sbjct 738073 TTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCCAATTGCTTACCAG 738014 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| | |||||| ||||| || || || || || || || ||| || |||| Sbjct 738013 CAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTATCTTGGATCTTCGCCTTTA 737954 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | | ||| | | || || || | ||| | || || || || ||||| | Sbjct 737953 CGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCT 737894 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||||||||| Sbjct 737893 TGACAAAAATCTGCAT 737878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496239906906720