Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq32 116 3e-21 seq12 109 4e-19 seq3 95.1 9e-15 >seq32 Length=1043406 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || || || | |||||| || || || ||||| |||||||| ||| Sbjct 738106 TGCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGG 738047 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | ||||| ||||| || ||||| | ||||||||||| ||||| || Sbjct 738046 AAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTG 737987 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| || ||||| || || || ||||| | || || | |||||| ||| | Sbjct 737986 GAATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAA 737927 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | |||| || ||||| || || || ||||| || |||||||| ||||| Sbjct 737926 CTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || || || | |||||| || || || ||||| |||||||| ||| Sbjct 738334 TGCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGG 738275 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | ||||| ||||| || ||||| | ||||||||||| ||||| || Sbjct 738274 AAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTG 738215 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| |||||||| || || || ||||| | || || | ||| || ||| | Sbjct 738214 GAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAA 738155 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | |||| || ||||| || || || ||||| || ||||| || ||||| Sbjct 738154 CTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738106 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | |||| ||||| || || || ||||| |||||||| ||| Sbjct 739246 TGCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGG 739187 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | |||| || || ||||||||||| | ||||||||||| || || || Sbjct 739186 AAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTG 739127 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || || ||||| ||| ||| || ||| | || || | ||| ||| || | Sbjct 739126 GGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAA 739067 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| || || || || || ||||| ||||| || || |||||| Sbjct 739066 CCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCATA 739017 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | |||| ||||| || || || ||||| |||||||| ||| Sbjct 731323 TGCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGG 731382 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | |||| || || ||||||||||| | ||||||||||| || || || Sbjct 731383 AAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTG 731442 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || || ||||| ||| ||| || ||| | || || | ||| ||| || | Sbjct 731443 GGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAA 731502 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| || || || || || || || || ||||| |||||||| Sbjct 731503 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 731551 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | || | |||||| || || || ||||| ||||||||||| Sbjct 738560 CCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAA 738501 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | ||||||| || || || |||||| | |||||||||||||| || ||| Sbjct 738500 AGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGA 738441 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || || || ||||| | || || | ||| || ||| || Sbjct 738440 ATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACT 738381 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| || ||||| || || || ||||| || ||||| || ||||| Sbjct 738380 TCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738334 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || |||||||| || || | | | || || || || Sbjct 738992 TGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATCCTCCAACTGC 738933 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||||||| | ||||||||||| || || ||||| || ||||| || ||| ||| Sbjct 738932 TTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCCTGAATCTTG 738873 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || |||||| ||| || || | ||||| || || || ||| Sbjct 738872 GCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTCTTCCCAGTC 738813 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||| Sbjct 738812 AGCGTCTTCACGAATATTTGCAT 738790 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || ||||| ||||| || || || | | | ||||| || || Sbjct 737852 TGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGC 737793 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | || | ||| || ||||| |||||| || |||||||| ||| || Sbjct 737792 TTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTC 737733 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || ||||| ||| || || | ||||| || || || || Sbjct 737732 GCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTT 737673 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 |||||||| |||||||||||||| Sbjct 737672 AGAGTTTTCACAAAAATTTGCAT 737650 >seq12 Length=1725783 Score = 109 bits (120), Expect = 4e-19 Identities = 166/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| ||||| | ||||| ||| | ||| || || || || ||||| || || || ||| Sbjct 1077051 TGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGG 1076992 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 |||| | | | |||| || || || || || ||| | || | || ||||| || || Sbjct 1076991 AGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTG 1076932 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| || ||||| ||||| |||||| | || || | ||| || || | Sbjct 1076931 GTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGCTCAA 1076872 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA-TATTTG 15181 | || | ||| |||||||| || || ||||| || ||||||||||||| |||||| Sbjct 1076871 CCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATTATTTG 1076817 >seq3 Length=2943993 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||||| || || || || || |||||||| | | || | || | || || ||||| Sbjct 307579 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTC-CATCCTCCAATTG 307637 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||| | || | |||||||||||| |||||| || |||||||| ||| || Sbjct 307638 CTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTT 307697 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || |||| |||| || || || | || || ||||| || || Sbjct 307698 AGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGT 307757 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| |||||||| ||||| Sbjct 307758 AAGAGTTTTCACAAAAATCTGCAT 307781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357376206177410