Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq32 131 2e-25 >seq32 Length=1043406 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || |||| |||||| || | ||| |||||||| ||||| ||||| || Sbjct 738788 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGAT 738729 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||| ||||| ||| |||||||||| ||||| || || || Sbjct 738728 AGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 738669 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | || | | ||| | ||| || Sbjct 738668 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCCACC 738609 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || |||||||| || ||||| ||||| |||||||| Sbjct 738608 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 738562 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| |||||||| || || ||||| ||| | Sbjct 731097 CCACCACGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGAC 731156 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| ||| || | ||| ||||| || |||||||||| ||||| || || || Sbjct 731157 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 731216 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | || | | ||| | ||| || Sbjct 731217 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACC 731276 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || || || ||||| || || ||||| ||||||||| Sbjct 731277 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCATG 731324 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| |||||||| || || ||||| ||| | Sbjct 739472 CCACCACGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGAC 739413 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| ||| || | ||| ||||| || |||||||||| ||||| || || || Sbjct 739412 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 739353 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | || | | ||| | ||| || Sbjct 739352 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACC 739293 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || || || ||||| || || ||||| ||||||||| Sbjct 739292 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCATG 739245 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | ||| | ||| | ||| ||||| |||||||| |||||||| Sbjct 738560 CCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAA 738501 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || | ||| || |||||| | ||||| ||||| ||||| || || Sbjct 738500 AGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGA 738441 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| || ||| ||| ||| | | || | | || | || ||| Sbjct 738440 ATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACT 738381 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || |||||||| ||||| || ||||| ||||||||| Sbjct 738380 TCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCATG 738333 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | ||| | ||| | ||| ||||| |||||||| ||||| ||| Sbjct 738104 CCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 738045 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | || || ||||| ||||||| |||||||| || || || Sbjct 738044 AGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGA 737985 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| || ||| ||| ||| | | || | | || | || ||| Sbjct 737984 ATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACT 737925 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || |||||||| ||||| || |||||||||||||| Sbjct 737924 TCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| ||| || |||||| ||| || | ||| || ||| Sbjct 730899 GTCGATTCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCATCTTCCAACTGCTTGCCA 730958 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||||||| || || || || || ||||||||||||||| ||| || ||| Sbjct 730959 GCGAAGATCAATCGTTGTTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTC 731018 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | | || || ||| || |||| ||| | || || ||||| ||||| Sbjct 731019 ACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGAGTC 731078 Query 127097 TTTACAAAAATCTGCAT 127113 ||||| || |||||||| Sbjct 731079 TTTACGAAGATCTGCAT 731095 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || ||||| || | ||||| ||| || | ||| || ||| Sbjct 749210 GTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAACTGCTTGCCA 749151 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||||||| ||||| || ||||| ||||||||||||||| ||| || ||| Sbjct 749150 GCGAAGATCAATCGTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTC 749091 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | | ||| | ||| || || | || | ||||||||||| ||||| Sbjct 749090 ACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAGTC 749031 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 749030 TTCACGAAGATCTGCAT 749014 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | || | ||| ||||| |||||||| ||||| ||| Sbjct 739244 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 739185 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || | |||||| ||||| ||||||| ||||||||||| || || Sbjct 739184 AGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 739125 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| ||||| || || ||| | | || | | || || ||| || Sbjct 739124 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 739065 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || ||||| ||||| ||||| || |||||||| Sbjct 739064 TCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 739018 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | || | ||| ||||| |||||||| ||||| ||| Sbjct 731325 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 731384 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || | |||||| ||||| ||||||| ||||||||||| || || Sbjct 731385 AGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 731444 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| ||||| || || ||| | | || | | || || ||| || Sbjct 731445 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 731504 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | || || ||||| || || || ||||| || |||||| Sbjct 731505 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCATG 731552 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | ||| | || | || ||||| |||||||| || || || | Sbjct 737876 CCACCACGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGAC 737817 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | ||| || || || |||| | || ||||| || || || Sbjct 737816 AGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGA 737757 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| || ||| ||| | | || | ||||| | || || Sbjct 737756 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACC 737697 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || |||||||| |||||||| |||||||| ||||| Sbjct 737696 TCCAGCGTAATTGTCTTGCCGGTTAGAGTTTTCACAAAAATTTGCAT 737650 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||| | ||| | || || || ||||| || ||||| || Sbjct 748785 TCCACCACGAAGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGA 748726 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| ||| || | ||| ||||| || |||||| || |||||||| || || Sbjct 748725 CAAGGTGCGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGG 748666 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| ||| | | || ||| | | || | | ||| | ||| | Sbjct 748665 AATGCCCTCCTTGTCC-TGAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCA 748607 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | |||||||| |||| ||| || || || || ||||| Sbjct 748606 CCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 748558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475479247926240