Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq32 113 4e-20 seq12 96.9 3e-15 seq3 95.1 1e-14 >seq32 Length=1043406 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || ||||| |||||||| || ||||| || | ||| | ||| || Sbjct 737859 CACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTC 737800 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || || || || | || | |||||||||||||| |||||||| || || ||||| Sbjct 737799 CAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTG 737740 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || || | || | |||||| | || || || || |||| || || Sbjct 737739 AATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTT 737680 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 ||||||||||||||| |||||||||||||||| Sbjct 737679 GCCGGTTAGAGTTTTCACAAAAATTTGCATCG 737648 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| |||||||| |||||||| || || || ||| | || ||| || Sbjct 738315 CACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTC 738256 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 |||||| || || || | ||||| || |||||||| || ||||||||||| |||||||| Sbjct 738255 CAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTG 738196 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || || | || | || | | || | || ||||| || || | || | Sbjct 738195 GATCTTCGCCTTTA-CGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCT 738137 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||||| || ||||| || ||||| Sbjct 738136 TGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738106 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | ||| || || || || || ||||||||||| || || || Sbjct 749240 CCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAT 749181 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| ||||| || || || ||| | ||||||||||||||||| || ||| Sbjct 749180 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGGA 749121 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || ||| || | || | || | | ||| | ||| || Sbjct 749120 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCA-CGTTCTCAATCGAGTCACTGGGCTCCAC 749062 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || || || | ||||||||||||||||| || || || || ||||| ||| || Sbjct 749061 CTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATTCCGCCAC 749006 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | ||| ||||| || || |||||||||||||| || || || Sbjct 748787 ATTCCACCACGAAGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 748728 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| ||||| || ||||| || | |||| |||||||| || || Sbjct 748727 GACAAGGTGCGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGT 748668 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || ||||| ||| || | |||| | ||| | ||| Sbjct 748667 GGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCC 748608 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344 || || || || | |||||||| || | ||| || || || ||||||||| || Sbjct 748607 ACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCATCACG 748554 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| || || || || |||||||| ||||| || || ||| ||| | | || ||| Sbjct 730886 CACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCG--GACAATGTGCGACCATCT 730943 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||| || || || ||| | ||||||||||| ||||| || || ||||| || || || Sbjct 730944 TCCAACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGGATGCCCTCCTTGTCC 731003 Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || || ||| || | || | || | | || || ||| || ||||| || | || Sbjct 731004 TGGATCTTTGCCTTCA-CGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGT 731062 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| ||||| || || ||||| Sbjct 731063 CTTCCCGGTAAGAGTCTTTACGAAGATCTGCAT 731095 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| || ||||||||| | ||||||||||||||||| || |||||||| || || Sbjct 738717 ATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTT 738658 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 || || || || || | || | |||| | ||| | ||| || || | || | Sbjct 738657 GTCCTGGATCTTCGCCTTCA-CGTTCTCTATCGAGTCACTGGGCTCCACCTCCAAGGTGA 738599 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| || ||||| ||||| || ||||| Sbjct 738598 TGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 738562 >seq12 Length=1725783 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 45105 TATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTA 45164 ||||| || ||||| || || || | || ||||| || || || |||||||| |||||| Sbjct 1077058 TATTTCATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTA 1076999 Query 45165 TAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGG 45224 || ||| || || || ||||| || || || ||| | || | ||||| || Sbjct 1076998 TAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGA 1076939 Query 45225 TCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGA 45283 || || || || || ||||| ||||| |||||| ||| | || | || | || || Sbjct 1076938 TCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTA-CGTTCTCAATGGAATCACT 1076880 Query 45284 AGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || || || | ||||| || || ||||| || |||||||||||||| Sbjct 1076879 TGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 1076823 >seq3 Length=2943993 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || ||||| ||||| || ||||| ||||| Sbjct 307555 CCACCACGGAGGCGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGAT 307614 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| |||||||| || || || | || | || || ||||| || ||| Sbjct 307615 AAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGA 307674 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || |||||||| || || | || | | ||||| | |||||| Sbjct 307675 ATCCCCTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACC 307734 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | ||||||||||| |||||||| |||||||| ||||| Sbjct 307735 TCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 307781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451982712954960