Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq25 120 4e-22 >seq25 Length=1211561 Score = 120 bits (132), Expect = 4e-22 Identities = 352/541 (65%), Gaps = 5/541 (1%) Strand=Plus/Minus Query 116742 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 116801 || ||| ||||||| ||||||||||| || || || ||||| || || ||||||||| Sbjct 250432 ACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATC 250373 Query 116802 CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATC 116861 |||| |||| |||||| | || || || ||||||| ||| | || | ||| Sbjct 250372 CCGAGCGCGAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATC 250313 Query 116862 CGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGACGACCAGCCTGGT 116917 || ||||| ||||| || || | || | | || | | | | || |||| | Sbjct 250312 CGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTG-CCTCCCTGAT 250254 Query 116918 TTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGC 116977 ||||| | || || ||| || || |||||||| || | | ||||| || | | Sbjct 250253 CGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCC 250194 Query 116978 CATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATAC 117037 |||| || || |||| | || ||| || || ||| | | | ||| || | Sbjct 250193 CATTAGTTCCAGCAATAAACGTATTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCC 250134 Query 117038 CCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCG 117097 | || || || ||||| |||| || | |||| || | || || || ||||| Sbjct 250133 CACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATAC 250074 Query 117098 AGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGT 117157 ||| |||| ||| | | || ||||| ||||| || || || || ||||| | Sbjct 250073 TGTCGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCAT 250014 Query 117158 TGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCA 117217 | || || || |||| ||||| || ||| || ||||| || ||||||||| | Sbjct 250013 TAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAA 249954 Query 117218 AGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGG 117277 ||| | | ||||| || |||||||| |||||||| |||||||||||||| || | Sbjct 249953 TAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAG 249894 Query 117278 G 117278 | Sbjct 249893 G 249893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613479392786160