Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq25 132 8e-26 seq10 100 5e-16 >seq25 Length=1211561 Score = 132 bits (146), Expect = 8e-26 Identities = 310/465 (67%), Gaps = 2/465 (0%) Strand=Plus/Minus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 |||| || ||||||| |||| | | |||||||| | | |||||| ||||| || Sbjct 251883 TTGTTGACAGTGAACTTGATGGGATCGGCAGCAGGCCTAGTGCGCAGATAATACATCCCC 251824 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 || || || || || ||| |||| | ||||| | | ||| | |||||| Sbjct 251823 GTTTTGAGTCCACGCTTCCAGGCGTAGAAATGCATACTCGTGATTTTACCGTAGTTGGGC 251764 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCC 204019 || ||||| | ||| ||||||||||| ||||| ||||| || || ||||| || ||| Sbjct 251763 TCCTTCATGTACAGGTTAAGAGACTGGCTCTGGTCAATGAACGGAGCACGATCAGCTGCC 251704 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 | || || || | ||||| | |||||||| || || ||| | | | || ||| | Sbjct 251703 AAATCGAGTATTTTTTTCTGGGGTATCTCCCAAACTGTTTTGTAGAGAGCCTTGATGTCT 251644 Query 204080 TGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 | || || | || | |||||| | || || | | | || | | || || Sbjct 251643 TCTGGAACTCCGTCA-ATATCCTGAATGGATCCCTGATTAGAAATGATCGCCGTCTTCAG 251585 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 || ||| ||| ||||| | ||||| || || | || ||| | ||| | || || Sbjct 251584 CTGATCCGACCAAATGCCAAGATCAATCAGATCACGAAGCATGTGCGAGTTAACAATTTG 251525 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 ||||| || |||||||| | || || || | |||| |||| | ||||||| || ||| Sbjct 251524 GAAGTCGCCCGACAGCACACGACGAGTAAATACGTTGCTGGTTACTGGTTCGGTCGACTC 251465 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC 204303 |||| || | ||||||||| || |||||||||||||||||| Sbjct 251464 TGTGTTACCCAGAATCTGAGCCGTCGAGGCCGTGGGCATGGGAGC 251420 >seq10 Length=2030774 Score = 100 bits (110), Expect = 5e-16 Identities = 339/525 (65%), Gaps = 5/525 (1%) Strand=Plus/Plus Query 159911 TTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTG 159970 ||||| | |||||| ||||| || ||| || || || || ||| ||| | |||||| Sbjct 443148 TTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTA 443207 Query 159971 GACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA 160030 | | ||||||| ||||||| |||||| |||||||| || |||| ||||| | | Sbjct 443208 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAA 443267 Query 160031 CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090 || ||| || | ||||| | || || |||||||| || | ||| | | | || Sbjct 443268 CCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCC 443327 Query 160091 TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGC 160150 || | | ||||||| ||||| || |||||||| || | ||||||| || Sbjct 443328 TTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAA-CGT 443386 Query 160151 TCGAC-GGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAG 160209 | || ||||||||||| ||| | || | |||||| | ||| ||||||| Sbjct 443387 TTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCGGATCCTTTACGTAGGTATCAATCAG 443446 Query 160210 CTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGT 160269 ||||||||||| | || | ||||| | ||| | || | || ||| | Sbjct 443447 AAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAACG 443506 Query 160270 CGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCC 160329 ||||| || || ||||| | || | | ||||| ||||||| | || Sbjct 443507 AGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCC 443566 Query 160330 GTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAG 160389 || |||||| ||||||||||| || | || ||||| || | |||| | | || || Sbjct 443567 ATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAG 443626 Query 160390 TCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTC 160434 | ||||||||| || | || | || |||||||| || || Sbjct 443627 AC---TTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTC 443668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795119159590560