Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq32 159 8e-34 seq12 114 3e-20 seq3 93.3 1e-13 >seq32 Length=1043406 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || ||||||||||| || ||||||||||| | ||| ||||||| || || Sbjct 737870 CGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTG 737811 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || || ||||| ||||| ||||||||||| ||| || Sbjct 737810 CGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCC 737751 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| |||||| || | ||||| | | ||| || |||| | Sbjct 737750 TCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGC 737691 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || |||||||||||||||||||| Sbjct 737690 GTAATTGTCTTGCCGGTTAGAGTTTTCACAAAAATTTG 737653 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| || ||||| || |||||||||| ||||||||||| ||| || Sbjct 748778 CGAAGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTG 748719 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||||||| || ||||| || || ||||| || || ||| || Sbjct 748718 CGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCC 748659 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||||||| |||||| || | | ||| | | || || |||| Sbjct 748658 TCCTTGTCCTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGT 748599 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | ||| ||||| || ||||| Sbjct 748598 GTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTG 748561 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| || || ||||||||||||| ||||||||||| | || Sbjct 749234 CGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTG 749175 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || |||||||| | || |||||||| ||| ||| || Sbjct 749174 CGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGGAATGCCC 749115 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| ||||||| || | | ||| | | || || |||| Sbjct 749114 TCCTTGTCCTGGATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGT 749055 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || ||||| ||||| || || || Sbjct 749054 GTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTG 749017 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || |||||||| || |||| ||||||||| | ||| || Sbjct 731103 CGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAACGTG 731162 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| ||||||||| || ||||| | || ||||||||||| || || Sbjct 731163 CGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCC 731222 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | | ||| ||| || || |||||| Sbjct 731223 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAAC 731282 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || |||||||| || || Sbjct 731283 GTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTG 731320 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| || |||||||| || || | ||||||||||| | ||| | ||||| Sbjct 738774 CAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGACCATC 738715 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||| ||||||||| |||||||| | || |||||||| || ||| || || || Sbjct 738714 CTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTC 738655 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| || | | ||| | | || || ||||| ||||| || Sbjct 738654 CTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCCACCTCCAAGGTGATGGT 738595 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||| ||||| || || Sbjct 738594 CTTGCCGGTGAGGGTTTTAACAAATATCTG 738565 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || |||||||| || |||| ||||||||| | ||| || Sbjct 739466 CGAAGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAACGTG 739407 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| ||||||||| || ||||| | || ||||||||||| || || Sbjct 739406 CGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCC 739347 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | | ||| ||| || || |||||| Sbjct 739346 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAAC 739287 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || |||||||| || || Sbjct 739286 GTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTG 739249 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || ||||| ||||| || | ||||||||| | | || | ||||| Sbjct 739001 AGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATCC 738942 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| | ||||||||| || || ||| || || ||| Sbjct 738941 TCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCC 738882 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| || | ||||| | | ||| || |||| ||| || ||| Sbjct 738881 TGAATCTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTC 738822 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || ||||| Sbjct 738821 TTCCCAGTCAGCGTCTTCACGAATATTTG 738793 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || ||||| || || || ||||||||||| | ||||||||| | | ||| Sbjct 738098 CGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTG 738039 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||| || || ||||| | |||||||||||| || ||| || Sbjct 738038 CGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCC 737979 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| || | | || | | ||| || || | | Sbjct 737978 TCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGC 737919 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || |||||||| || Sbjct 737918 GTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTG 737881 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || ||||| || || || ||||||||||| | ||||||||| | | ||| Sbjct 738326 CGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTG 738267 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||| || || ||||| | |||||||||||| || ||| ||| Sbjct 738266 CGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCT 738207 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| || | | || | | ||| || || | | Sbjct 738206 TCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGC 738147 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || ||||| || || Sbjct 738146 GTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTG 738109 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || ||||||||||| | ||||||||| | | ||||| || || Sbjct 731340 AGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCC 731399 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || || ||||| | ||||||||| ||||| || || ||| || Sbjct 731400 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCT 731459 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| || | | || | | || || || | ||||| ||| Sbjct 731460 TGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTC 731519 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| ||||| Sbjct 731520 TTCCCGGTAAGCGTCTTCACAAAGATTTG 731548 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || ||||||||||| | ||||||||| | | ||||| || || Sbjct 739229 AGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCC 739170 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || || ||||| | ||||||||| ||||| || || ||| || Sbjct 739169 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCT 739110 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| || | | || | | || || || | ||||| ||| Sbjct 739109 TGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTC 739050 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || || || Sbjct 739049 TTCCCGGTAAGAGTCTTTACGAAGATCTG 739021 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || || || || || || ||||||||||| | |||||| |||| | ||| Sbjct 738554 CGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTG 738495 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| |||||| || ||||| || | |||||| || || || ||| || Sbjct 738494 CGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCC 738435 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| || | | || | | ||| || || | | Sbjct 738434 TCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGC 738375 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || ||||| || || Sbjct 738374 GTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTG 738337 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || ||||||||||||||||| | || ||| |||| |||||| ||||||| Sbjct 730966 ATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAACATCCAGAAG 730907 Query 200998 GAGTCTACTCTTCACCTTGT 201017 || || || ||||||||||| Sbjct 730906 GAATCGACCCTTCACCTTGT 730887 >seq12 Length=1725783 Score = 114 bits (126), Expect = 3e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| ||||| || ||||| ||||| |||||||||||||| | || ||||| | | ||| Sbjct 1077044 TCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAGAGAGT 1076985 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || || |||| |||||| ||||||||||| || || || || || || ||||| Sbjct 1076984 CCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCC 1076925 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| || || || |||||||| ||| || | || || ||| || || || | Sbjct 1076924 CTCTTTGTCTTGGAT-TTTTGCTTTTACGTTCTCAATGGAATCACTTGGCTCAACCTCAA 1076866 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| || ||||||||||| Sbjct 1076865 GGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTG 1076826 >seq3 Length=2943993 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || || |||||||| || | ||||| |||| || | | |||||| Sbjct 307570 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCC 307629 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| || || || || |||||||| ||||| || ||| || || || Sbjct 307630 TCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCT 307689 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| || | | || | | || || || | ||||| || Sbjct 307690 TGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTT 307749 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||||||||||||||| || Sbjct 307750 TTGCCGGTAAGAGTTTTCACAAAAATCTG 307778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178866829512942