Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq32 138 1e-27 >seq32 Length=1043406 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | ||||||| ||||| || | || ||| || || || |||||||| | Sbjct 738790 TGCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAG 738731 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||||||| || | || || | |||||| || ||||| ||||| || |||||||| | | Sbjct 738730 ATAGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTG 738671 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| ||||||| ||| | || | | || ||| || | |||| Sbjct 738670 GAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCCA 738611 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || ||||||||||| || ||||| Sbjct 738610 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 738562 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 |||||| | | ||| | ||| || || | || |||||||||||| |||||||| || Sbjct 749241 GCCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 749182 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 ||| ||||| | || || | ||||||||| ||||| ||||| || |||||||| | || Sbjct 749181 TAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGG 749122 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || |||||||||| |||||| ||| | || | | || ||| || | ||||| Sbjct 749121 AATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCAC 749062 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||| |||||||| || || || || || ||||| |||||| Sbjct 749061 CTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 749013 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | || ||||||||| || ||||||||||| |||||||| | || || Sbjct 738087 CACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTC 738028 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||||| || || || ||||| ||||||||||| | || | || |||||| || Sbjct 738027 CAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTATCTTG 737968 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | || ||||| | ||| || || | ||| ||||| || Sbjct 737967 GATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTT 737908 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || ||||| || ||||| Sbjct 737907 GCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||||||||| | ||||| | || || | |||||| || || || Sbjct 731132 CTCTTTCTGGATGTTGTAGTCGGACAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAA 731191 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || |||||||| | || | || |||||||||| ||||||| ||| | | Sbjct 731192 GATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 731251 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| || | ||||| |||| ||| || || || || |||||||| || || Sbjct 731252 CTCTATCGAGTCACTTGGCTCCACCTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCAC 731311 Query 46582 AAAGATTTGCAT 46593 ||| || ||||| Sbjct 731312 AAATATCTGCAT 731323 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||||||||| | ||||| | || || | |||||| || || || Sbjct 739437 CTCTTTCTGGATGTTGTAGTCGGACAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAA 739378 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || |||||||| | || | || |||||||||| ||||||| ||| | | Sbjct 739377 GATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 739318 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| || | ||||| |||| ||| || || || || |||||||| || || Sbjct 739317 CTCTATCGAGTCACTTGGCTCCACCTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCAC 739258 Query 46582 AAAGATTTGCAT 46593 ||| || ||||| Sbjct 739257 AAATATCTGCAT 739246 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | || ||||||||| || ||||||||||| |||||||| | || || Sbjct 738315 CACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTC 738256 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||||| || || || ||||| ||||||||||| | || | || ||||| || Sbjct 738255 CAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTG 738196 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | || || || | ||| || || | ||| ||||| || Sbjct 738195 GATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTT 738136 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || |||||||| ||||| Sbjct 738135 GCCGGTTAGAGTCTTGACAAAGATCTGCAT 738106 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || | ||||| | || || | |||||| || || || Sbjct 748748 TCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCCGCAAAG 748689 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||| ||||| || | || | || |||||||||| ||||| ||| | || Sbjct 748688 ATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTC 748629 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| || | ||||| |||| ||||| |||||||| |||| || || || Sbjct 748628 TCTATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACG 748569 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 748568 AAGATTTGCAT 748558 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || ||||||||||| ||||| || |||| || | ||| ||||| || || Sbjct 731360 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAA 731419 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | ||| ||||| ||||| ||| | | Sbjct 731420 GATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATT 731479 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || || | || || || | ||||| || || || || ||||| || || Sbjct 731480 CTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCAC 731539 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 731540 AAAGATTTGCAT 731551 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| | ||||| | || || | ||||||||| ||||| Sbjct 730905 TCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCATCTTCCAACTGCTTGCCAGCGAAG 730964 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || || ||||| | || | || |||||||||| |||||| ||| | || Sbjct 730965 ATCAATCGTTGTTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTC 731024 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || || | || || || | ||||| || || || || || || || || Sbjct 731025 TCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTACG 731084 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 731085 AAGATCTGCAT 731095 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || ||||||||||| ||||| || |||| || | ||| ||||| || || Sbjct 739209 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAA 739150 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | ||| ||||| ||||| ||| | | Sbjct 739149 GATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATT 739090 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || || | || || || | ||||| || || || || || || || || Sbjct 739089 CTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGAGTCTTTAC 739030 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 739029 GAAGATCTGCAT 739018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565212780569520