Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq12 125 7e-24 seq32 118 1e-21 >seq12 Length=1725783 Score = 125 bits (138), Expect = 7e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 ||| ||||||||| || || || || ||||| || |||||||| ||| | || || ||| Sbjct 1076818 AAATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGC 1076877 Query 38299 CCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 | | || | | | |||| | |||| |||||||| |||||||||||||| || | Sbjct 1076878 CAAGTGATTCCATTGAGAACG-TAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCA 1076936 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 || ||||| ||||| || | ||| || || ||| |||| |||| ||| || ||| |||| Sbjct 1076937 GATCAACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGAC 1076996 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || || || |||||||| |||| || ||| | || || Sbjct 1076997 TATAATATTCAAAAGGAGTCGACACTCCATCTTGTTCT 1077034 >seq32 Length=1043406 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || ||||| ||||| ||||| ||||||||| | || || ||| ||| Sbjct 738562 ATGCAGATATTTGTTAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 738621 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || |||| ||||| ||||| ||||| | ||||| Sbjct 738622 GACTCGATAGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCAGACCA 738680 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| || || ||| |||| || | || || || |||||||| Sbjct 738681 GCAACGATTGATCTTCGCAGGAAAGCAGTTGGAGGATGGTCGTACTCTATCTGACTACAA 738740 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || || || ||||||| || ||||||||||||||| | || ||| Sbjct 738741 CATTCAGAAAGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 738789 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || || || || || || |||||| |||| || ||| | | Sbjct 731095 ATGCAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 731036 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | || |||| | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 731035 GATTCGATTGAGAACG-TGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCA 730977 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||| ||| |||| || | ||||| | ||||||||| Sbjct 730976 ACAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAA 730917 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| |||| || || | ||||| ||| | | ||||| Sbjct 730916 CATCCAGAAGGAATCGACCCTTCACCTTGTGCTTCGTCTTCGTGGCGG 730869 Score = 111 bits (122), Expect = 2e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || |||||||| ||||| | || || ||| ||| Sbjct 749013 AATGCAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAG 749072 Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||| | || |||| | || | ||| |||| ||||| ||||| ||||| | |||| Sbjct 749073 TGACTCGATTGAGAACG-TGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCAGACC 749131 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || | || | ||| ||||| ||| |||| || | |||||||| ||||||| Sbjct 749132 AGCAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTATCTGACTACA 749191 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || || | ||||| ||| Sbjct 749192 ACATCCAAAAGGAGTCCACCCTTCACCTTGTGCTTCGT 749229 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || || || || || || |||||| |||| || ||| | | Sbjct 739474 ATGCAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 739533 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | || || | | || | || || | ||||||||||| || ||| | ||||| Sbjct 739534 GATTCGATTGAGAATG-TGAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCAGACCA 739592 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||| ||| |||| || | ||||| | ||||||||| Sbjct 739593 ACAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACATTGTCCGACTACAA 739652 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || |||||| |||| || || | ||||| ||| Sbjct 739653 CATTCAGAAGGAATCGACCCTTCACCTTGTGCTTCGT 739689 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||| ||||| | || || ||| ||| Sbjct 748558 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 748617 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | || | ||| || | ||||| ||||| ||||| | || || Sbjct 748618 GACTCGATAGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAG 748677 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | ||||| || ||| |||| || | |||||| | ||||||||| Sbjct 748678 CAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAAC 748737 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || ||| | ||||| ||| Sbjct 748738 ATCCAAAAGGAATCCACTCTTCATCTTGTGCTCCGT 748773 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || ||||| || || || || |||||| |||| || ||| | | Sbjct 731551 ATGCAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 731492 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | || || | | || | || || | ||||||||||| || || | || || Sbjct 731491 GATTCGATTGAGAATG-TGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCA 731433 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||||||| |||| |||| || || || ||||||||| Sbjct 731432 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCGGACTCTTTCCGACTACAA 731373 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| |||||||| | ||||| || | ||||| ||| || | || ||| Sbjct 731372 CATTCAAAAGGAGTCAACGCTTCACCTAGTGCTTCGTCTGCGTGGTGGC 731324 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || || || || || || |||||| |||| || ||| | | Sbjct 739018 ATGCAGATCTTCGTAAAGACTCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 739077 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | || || | | || | || || | ||||||||||| || || | || || Sbjct 739078 GATTCGATTGAGAATG-TGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCA 739136 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||||||| |||| |||| || || || ||||||||| Sbjct 739137 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCGGACTCTTTCCGACTACAA 739196 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| |||||||| | ||||| || | ||||| ||| || | || ||| Sbjct 739197 CATTCAAAAGGAGTCAACGCTTCACCTAGTGCTTCGTCTGCGTGGTGGC 739245 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || ||||| || || || || || || | || || || | | | Sbjct 738790 ATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAGC 738849 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || || | || || ||||| ||||| | || || Sbjct 738850 GACACAATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCGCCTGATCAG 738909 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| ||| |||| || | || ||||| ||||||||| Sbjct 738910 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCAGACTACAAC 738969 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || |||||| |||| || || | ||||| ||| || | || || Sbjct 738970 ATTCAGAAGGAATCGACCCTTCACCTTGTGCTTCGTCTGCGTGGTGG 739016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500150129667840