Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq25 132 6e-26 seq10 104 3e-17 >seq25 Length=1211561 Score = 132 bits (146), Expect = 6e-26 Identities = 355/538 (66%), Gaps = 15/538 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||||||||||| ||||| ||| | || ||||| ||||| |||||| | || ||| | Sbjct 249893 CCTCAGTACATGTTTATGCGCGTCTCAATAGGTATTCATGGTGAAGATGTGGACGCTGCT 249952 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTA---TGTTCATCCACGCAACACCAACCCTC 111728 | ||||| ||| | ||||| || | ||| || ||||| |||| || || Sbjct 249953 ATTGAGACCTACAATCTAATGTC---TGAAAAGTGGTTGATTCACGCCTCACCCACTCTT 250009 Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 || || ||||| || || || || ||||| || ||||| | || ||| ||||| Sbjct 250010 TTTAATGCTGGGACGCCTTACCCTCAGATGTCTAGCTGTTTTTTGCTTACAATGAAGGAC 250069 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || ||| | || || || | ||| |||| ||||||| | ||||| || || Sbjct 250070 GACAGTATCGAGGGTATATATGACACGCTCAAACAATGTGCACTGATCTCGAAAAACGCG 250129 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 ||||| ||||| | | | || || || ||| || | |||| || || Sbjct 250130 GGTGGGATCGGTCTCAATGTTCACTGCATCCGAAGCAAGAATACGTTTATTGCTGGAACT 250189 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 ||||| | || ||||| || | || |||||||| || || ||| ||| || || ||| Sbjct 250190 AATGGGGAGTCCAATGGTCTTGTACCGATGCTTCGGGTCTTCAACAGCACCGCTCGTTAT 250249 Query 111969 GTAAACCAAGCTGGGCGTCGCAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 || | | || ||| | | | || | | || ||||||| || |||||||| Sbjct 250250 GTCGATC-AGGGAGGCAACAAACGACCCGGTGCCTTTGCCATCTATCTCGAACCATGGCA 250308 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG--GCGCGG 112082 ||||| | || |||| | ||||| || ||| || | ||| ||| |||| Sbjct 250309 TCCGGATGTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCTGAAGAGATTCGCGC 250368 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | || ||||||||| ||| || |||||||| ||||| ||||||||| ||||||||| Sbjct 250369 T--CGGGATCTCTTCCTCGCACTTTGGATTCCCGATCTATTCATGAAGCGAGTTGAGG 250424 >seq10 Length=2030774 Score = 104 bits (114), Expect = 3e-17 Identities = 173/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 || ||| | ||||| ||||| | || ||| || ||||| || ||||||||| | | | Sbjct 443404 CTGTTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAAGAAGGCCGATTGGGCTCTTAGG 443345 Query 102150 TGGTTTG---ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 102206 ||| ||| ||| |||| | | | | || ||||| || | || || || | || Sbjct 443344 TGGATTGCAAATAAAAAGGCACCGTAC---GCGGAGCGTCTGGTGGCGTTCGCTGCTATT 443288 Query 102207 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCT 102265 ||||| | ||||| |||||||| || ||| | || | |||||||||||||| ||||| Sbjct 443287 GAGGGCGTATTCTTTTCTGGTTCATT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCT 443229 Query 102266 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGA 102325 |||||| || ||| ||| |||||||| ||| ||| || || || |||||| || Sbjct 443228 CATGCCTGGCCTCACCTTTAGTAACGAGCTGATCAGTCGAGATGAAGGCCTCCACACGGA 443169 Query 102326 GTTTGC 102331 ||||| Sbjct 443168 TTTTGC 443163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620714264850720