Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq25 147 3e-30 seq10 120 4e-22 >seq25 Length=1211561 Score = 147 bits (162), Expect = 3e-30 Identities = 385/586 (66%), Gaps = 5/586 (1%) Strand=Plus/Minus Query 110606 CCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAAC 110665 ||||||| | ||||||||| || || |||||||| | || ||| || || || | Sbjct 250424 CCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGC 250365 Query 110666 GAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCC 110725 || ||||||| | || ||| |||| ||||| ||| | || | ||||| |||| Sbjct 250364 GAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCC 250305 Query 110726 ATGGTTCGAGATAGACAGCGATGGATCC----CTTACGACGACCCGCCTGGTTAACATAG 110781 ||||||||||||||| || | || || | | | | | | |||| | ||||| Sbjct 250304 ATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTC-CCTGATCGACATAA 250246 Query 110782 CGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTA 110841 || || ||| |||||||||| ||||| || | || |||| ||| | ||||| || Sbjct 250245 CGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTT 250186 Query 110842 CCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCC 110901 || ||| | || ||| || ||| ||| | || | ||| || |||||||| Sbjct 250185 CCAGCAATAAACGTATTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCCCACCCGCG 250126 Query 110902 CACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCC 110961 || || ||||||| | | |||| || |||| ||||| || || || || Sbjct 250125 TTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCC 250066 Query 110962 TTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGT 111021 || | | || | ||| || |||||||||||| |||||| || ||||| || || Sbjct 250065 TTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGA 250006 Query 111022 GTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAG 111081 || |||| || ||||| ||| || ||||| ||||| || || | || | | Sbjct 250005 GTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCG 249946 Query 111082 GGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCG 111141 ||||||| ||| |||||||| || | || ||||| ||||| || |||||| | || Sbjct 249945 TCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTCC 249886 Query 111142 ATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCT 111187 | || ||||| ||| |||| || |||||||| |||| Sbjct 249885 CAAATTTTCCCATCCCTACGGAGAAGATACGACTTCTCTAACGTCT 249840 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGA 109466 ||| ||||||||||| ||||||||||| ||| |||||| ||||| | |||||| | Sbjct 251842 GCGCAGATAATACATCCCCGTTTTGAGTCCACGCTTCCAGGCGTAGAAATGCATACTCGT 251783 Query 109467 GAGTTTGGAAAGT-GTCGGACT-CTCCATAAACAAGTTCATCGACTGAGACTGATCGATG 109524 || ||| | || || || || || ||| ||| ||| | ||||| ||| || ||| Sbjct 251782 GATTTT--ACCGTAGTTGGGCTCCTTCATGTACAGGTTAAGAGACTGGCTCTGGTCAATG 251725 Query 109525 AATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584 || || |||||||||| |||| |||| || || ||| || ||||| || || Sbjct 251724 AACGGAGCACGATCAGCTGCCAAATCGAGTATTTTTTTCTGGGGTATCTCCCAAACTGTT 251665 Query 109585 TTGTACAAATTCTTGATATCATCGGGAA 109612 ||||| | | |||||| || || |||| Sbjct 251664 TTGTAGAGAGCCTTGATGTCTTCTGGAA 251637 >seq10 Length=2030774 Score = 120 bits (132), Expect = 4e-22 Identities = 368/561 (66%), Gaps = 30/561 (5%) Strand=Plus/Plus Query 119498 AAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGG 119557 |||| | || || || |||||||| ||| ||| ||||| ||||| ||| || ||||| Sbjct 443166 AAATCCGTG-TGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCCAGG 443224 Query 119558 CATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCC 119617 |||||| || | ||||| ||||| ||||||| | ||| ||||||||||| | ||| Sbjct 443225 CATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATACGCC 443284 Query 119618 CTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGT------CGAA 119671 ||| | | ||||| || | |||||||| || | ||| | ||| | | | Sbjct 443285 CTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGT---GCCTTTTTATTTGCAAT 443341 Query 119672 CCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTT---- 119727 |||| | |||||||| | |||||| | | || || | ||||| ||||| | Sbjct 443342 CCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAA 443401 Query 119728 CGAAAAGTTGC-TTCTTTTCAGCACC--ATCCTTAATATATTTATCAATGAGTTTAGAGT 119784 | ||||| || |||| ||| |||||| | || ||||||| || ||||| Sbjct 443402 CAGAAAGTCGCGTTCT-------ACCGGATCCTTTACGTAGGTATCAATCAGAAGAGAGT 443454 Query 119785 AGGTCTCACCATGAACCATTTCATTGTGTGAC-TGATAGGCATAAAATGAGCGAGCTTCG 119843 | | ||| ||||| |||| | | ||| || ||||||| | ||||| ||| Sbjct 443455 ACATTTCAGAATGAATGTTTTC-TACGGCGACTTGCATTCCATAAAAACAACGAGCCTCG 443513 Query 119844 GAAATTTGCACTTCGTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGAT 119903 | |||||| || |||| | |||||| | | ||||||| ||| || ||||| Sbjct 443514 GGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCACTG 443573 Query 119904 CCAGCGAAGAATGCTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTC 119963 | |||||||| || |||| ||| ||||| | | || ||| || || ||| | Sbjct 443574 GCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCC 443633 Query 119964 CAGTCGTCCATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGA--CATCTGTG 120021 ||||| | ||| || | || || || || ||| |||||||| ||| || | | Sbjct 443634 CAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAAC--CG 443691 Query 120022 CCTTTTTATAGAGTTCCCAAA 120042 | || || |||| ||||||| Sbjct 443692 CTTTCTTGTAGAACTCCCAAA 443712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588949304662800