Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq25 111 2e-19 seq51 89.7 6e-13 >seq25 Length=1211561 Score = 111 bits (122), Expect = 2e-19 Identities = 417/646 (65%), Gaps = 10/646 (2%) Strand=Plus/Minus Query 106672 GGCCCGTCCCT-CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGT 106730 ||||| | ||| ||| ||||||||| | ||| || ||| |||||||| ||| || Sbjct 250535 GGCCCCTACCTTCCGACTCGTACTTCGCGTAAAGCATTTCGAACTCCTCCCCCCAACAGT 250476 Query 106731 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCC 106790 | | ||||| || || | || | || | ||| || ||| ||||||| | Sbjct 250475 CAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGGTCCACGAACTACCTGCCTCAACTC 250416 Query 106791 GCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTT 106850 |||||||||| || || |||||||| || | |||||||| | | ||| ||||| Sbjct 250415 GCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATCTCTT 250356 Query 106851 CGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 106910 | | || ||| |||||||| | |||| || | ||||| |||||||| || | Sbjct 250355 CAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGTTCGA 250296 Query 106911 GATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTG 106966 |||||| || | | || | || | | || | |||| ||||| || || ||| Sbjct 250295 GATAGATGGCAAAGGCACCGGGTCGTTTGTTG-CCTCCCTGATCGACATAACGAGCGGTG 250237 Query 106967 GCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATA 107026 ||| || || |||||||| || | || ||||| || | ||||| || || |||| Sbjct 250236 CTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCAATA 250177 Query 107027 CGAGATTTATTGGCTCTCACAT-CA-TGGATGTGCATCCCAATACCCCCAGCCCACTTTG 107084 | || || ||| || || || || | | | || || || || || || | Sbjct 250176 AACGTATTCTT-GCT-TCGGATGCAGTGAACATTGAGACCGATCCCACCCGCGTTTTTCG 250119 Query 107085 AGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGG 107144 |||| | ||||| | | || || |||| ||||| | ||| ||| ||||| | | Sbjct 250118 AGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCCTTCATTG 250059 Query 107145 CGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTG 107204 | | || || || |||||||| || || || |||||||| || || || |||| Sbjct 250058 TAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTGGGTG 249999 Query 107205 TTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGT 107264 |||||||| ||| || ||||| | ||| ||||| | ||| || | | Sbjct 249998 AGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGTCCACAT 249939 Query 107265 CTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 |||| || || || || || | || |||||||||||||| || || Sbjct 249938 CTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGG 249893 >seq51 Length=753372 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 169362 TTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACC 169421 || || || ||||| |||||||||||| | ||||||||||| || |||||| || || Sbjct 492418 TTACCGCGAAGAGGGAAGACGCCATAGCGGTCACGTCCAACCACTCCGAGACCGGCCACG 492359 Query 169422 GCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCC 169481 ||||| | || || || || ||||| |||| |||||||| || | || | | Sbjct 492358 GCAAGAGACTTGGCCGAGTCTCCCTCAGTGAGGATGAGGGTGCAGTGCTGCGAGTTCCTT 492299 Query 169482 GTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAATTTTGG 169530 || || || | ||| || ||||||| ||| ||||| || | | ||||| Sbjct 492298 GTTCCTGCATCGTTGGCATCGTCCAGCTTTGGAATCCCCTTTAATTTGG 492250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589954059120240