Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq12 167 5e-36 seq32 147 5e-30 seq3 120 7e-22 >seq12 Length=1725783 Score = 167 bits (184), Expect = 5e-36 Identities = 171/222 (77%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | |||||| || || || ||||| ||||||||||| || |||| ||||| | | Sbjct 1077040 AGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAGAGAGTCCGC 1076981 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || || | ||||||||| ||||||||||| |||||||| ||||| || || || ||| Sbjct 1076980 CCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCT 1076921 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGG 195099 |||||||| |||||| || ||||||||||||| || |||| || || |||||| Sbjct 1076920 TTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATC---ACTTGGCTCAACCTCAAGG 1076864 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || ||||| || | ||| || || || | ||||||| Sbjct 1076863 GTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 1076822 >seq32 Length=1043406 Score = 147 bits (162), Expect = 5e-30 Identities = 161/213 (76%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| ||||| || ||||| || | || || | |||||||| Sbjct 749222 ACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCC 749163 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| | |||||| ||||||||||||||||| || ||||| || Sbjct 749162 AACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGG 749103 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| ||| ||||||||||| | ||| ||| ||||| || || || | || Sbjct 749102 ATCTTTGCCTTCACGTTCTCAATCGAGTC---ACTGGGCTCCACCTCCAGTGTGATTGTT 749046 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || | ||| || ||||| | |||||| Sbjct 749045 TTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 749013 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| |||||||| || || || | || || | |||||||| Sbjct 737858 ACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCC 737799 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| || ||||| ||||| || |||||||| || ||||||||| Sbjct 737798 AACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGA 737739 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| ||||| |||||| || || |||| ||||| Sbjct 737738 ATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTG 737679 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||| || || | |||||| Sbjct 737678 CCGGTTAGAGTTTTCACAAAAATTTGCAT 737650 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || || ||||| ||||| |||| | || | |||||||| Sbjct 739682 ACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCTTCC 739623 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| | ||||||||||||||| || ||||| |||||||||||| Sbjct 739622 AACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGGATGCCCTCTTTGTCTTGA 739563 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| | || | || || || ||||| | ||||| Sbjct 739562 ATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 739503 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| |||||||| | ||||| Sbjct 739502 CCGGTAAGAGTCTTTACGAAGATCTGCAT 739474 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || ||||| |||||||| ||||| |||| |||||| | |||||||| Sbjct 738314 ACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCC 738255 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||||| || ||||| | || || |||||||| ||||||||||| || ||||| Sbjct 738254 AATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGG 738195 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||||| | || ||| ||| ||||| || || | ||| Sbjct 738194 ATCTTCGCCTTTACGTTCTCAATCGAATC---ACTGGGTTCAACTTCTAGCGTTATGGTC 738138 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||| || || || | ||||| Sbjct 738137 TTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738106 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || || || || ||||| |||| | || | |||||||| Sbjct 730887 ACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCATCTTCC 730946 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| | ||||||||||||||| || ||||| || ||||| || Sbjct 730947 AACTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 731006 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||| ||||||||||| | || | || || || ||||| | ||||| Sbjct 731007 ATCTTTGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 731066 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| |||||||| | ||||| Sbjct 731067 CCGGTAAGAGTCTTTACGAAGATCTGCAT 731095 Score = 134 bits (148), Expect = 3e-26 Identities = 160/213 (75%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCTCCCATCTTC 194990 ||||| ||||||||||| || ||||| || ||||| || | |||| || | |||||||| Sbjct 748766 ACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAG-GTGCGACCATCTTC 748708 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||| || || ||||| || ||||| || ||||| |||||||| || ||||| || Sbjct 748707 CAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCCTG 748648 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 ||| ||| ||| || ||||| || | ||| ||| ||||| || || || | || Sbjct 748647 AATCTTTGCCTTCACATTCTCTATCGAGTC---ACTGGGCTCCACCTCCAGTGTGATTGT 748591 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||||||| || ||||| | |||||| Sbjct 748590 TTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 748558 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || ||||| |||||||| ||||| |||| |||||| | |||||||| Sbjct 738086 ACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCC 738027 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||||| || ||||| | || || |||||||| |||||||| || || ||||| Sbjct 738026 AATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTATCTTGG 737967 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||||||||| | || ||| ||||| || || | ||||| Sbjct 737966 ATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTG 737907 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || || || | ||||| Sbjct 737906 CCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || ||||| |||||||| |||||||| | |||||| | || ||||| Sbjct 738542 ACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCC 738483 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| ||||| || | || ||||| ||||| |||||||| || || ||||| Sbjct 738482 AACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTCCTTATCTTGG 738423 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||||| | || ||| ||| ||||| || || | ||| Sbjct 738422 ATCTTCGCCTTTACGTTCTCAATCGAATC---ACTGGGTTCAACTTCTAGCGTTATGGTC 738366 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||| || || || | ||||| Sbjct 738365 TTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738334 Score = 127 bits (140), Expect = 5e-24 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || |||||||| ||||| ||||| || | ||||| | ||||| || | ||| Sbjct 738765 GTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGACCATCCTCCAACTG 738706 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||||||||| | |||||| |||||||| |||||||| || ||||| || || || Sbjct 738705 CTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATCTT 738646 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||| |||||||| || | ||| ||| ||||| || | ||| | ||||| || Sbjct 738645 CGCCTTCACGTTCTCTATCGAGTC---ACTGGGCTCCACCTCCAAGGTGATGGTCTTGCC 738589 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || | ||||| Sbjct 738588 GGTGAGGGTTTTAACAAATATCTGCAT 738562 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || || ||||| ||||| || | || || | ||||| || Sbjct 738998 ACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATCCTCC 738939 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| | || || || || || ||||| || || || || ||| Sbjct 738938 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCCTGA 738879 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| ||||| | ||||||||| || |||| ||||| Sbjct 738878 ATCTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTCTTC 738819 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | |||||| Sbjct 738818 CCAGTCAGCGTCTTCACGAATATTTGCAT 738790 Score = 116 bits (128), Expect = 8e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| |||||||| ||||| |||| |||||| | || || || Sbjct 739226 ACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCC 739167 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| || || || ||||| | || || || || || || || || |||||||||||| Sbjct 739166 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGA 739107 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| | || | || || || ||||| | ||||| Sbjct 739106 ATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 739047 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| |||||||| | ||||| Sbjct 739046 CCGGTAAGAGTCTTTACGAAGATCTGCAT 739018 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| |||||||| ||||| |||| |||||| | || || || Sbjct 731343 ACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCC 731402 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| || || || ||||| | || || || || || || || || |||||||||||| Sbjct 731403 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGA 731462 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| | || | || || || ||||| | ||||| Sbjct 731463 ATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 731522 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | |||||| Sbjct 731523 CCGGTAAGCGTCTTCACAAAGATTTGCAT 731551 >seq3 Length=2943993 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| || |||||||||||||| | | | | ||||| || Sbjct 307573 ACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCC 307632 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || || || ||||| || ||||||||||| ||||| || || ||||||||| Sbjct 307633 AATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGA 307692 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| | || || || || ||||| || | || || Sbjct 307693 ATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTG 307752 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||| || || | ||||| Sbjct 307753 CCGGTAAGAGTTTTCACAAAAATCTGCAT 307781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109430055565142