Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq10 239 5e-58 seq25 174 2e-38 >seq10 Length=2030774 Score = 239 bits (264), Expect = 5e-58 Identities = 492/726 (68%), Gaps = 18/726 (2%) Strand=Plus/Plus Query 18831 ACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATT 18890 ||||||||| || || | | ||||| || || |||||||||||||| ||| ||| | Sbjct 443030 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 443089 Query 18891 TACTGCCTC-----TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGA 18945 || ||||| |||| | ||| ||| || || | |||| || | || | Sbjct 443090 GACCGCCTCCCTCATGATGTCATA-----AACCCTTTCCGCCGTAGGCTTGTTGACAATA 443144 Query 18946 TGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCA 19005 |||||||| || | ||||||||||| || || || || |||| ||| |||| || Sbjct 443145 TGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCG 443204 Query 19006 TTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAAT 19065 ||| ||| || | |||||||| || || | || || | |||||| || ||||||||| Sbjct 443205 TTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAT 443264 Query 19066 GATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA 19125 || ||||||||||||| || || | || || || || || || | || | || Sbjct 443265 GAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGT 443324 Query 19126 GCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATT 19185 || | ||||| |||||| | || |||||||| |||||||| ||||| |||| Sbjct 443325 GCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAAC 443384 Query 19186 GTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATC 19245 || | || | ||||| ||| | || || | | ||| || || || | ||| ||| Sbjct 443385 GTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCGGATCCTTTACGTAGGTATCAATC 443444 Query 19246 AATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACAT 19305 | | | ||||||||| |||||||| ||||||| || | || | ||| |||||||| Sbjct 443445 AGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAA 443504 Query 19306 CTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGA--CCAAATTTTCATTAACTA 19363 | || || | || || || || ||||||| ||| | | |||||||||||| | Sbjct 443505 CGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGA 443562 Query 19364 TTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATC-TGAG 19422 | |||||||| || || || || || || |||| ||| || || || | | | Sbjct 443563 TGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCA- 443621 Query 19423 GTTAA-TGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAA 19481 |||| | | ||| ||| | | ||| || | |||||| ||||| ||||||||||| || Sbjct 443622 -TTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAA 443680 Query 19482 AGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAAC 19541 ||| || | ||||| || || | | ||| |||||| | ||||| || || | | ||| Sbjct 443681 AGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAAC 443740 Query 19542 AAATCT 19547 ||||| Sbjct 443741 GAATCT 443746 >seq25 Length=1211561 Score = 174 bits (192), Expect = 2e-38 Identities = 364/538 (68%), Gaps = 6/538 (1%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 |||| |||| ||| || |||||||| || | || | ||||| || | | |||||| Sbjct 250412 TCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATCTCTTCAG 250353 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 |||| | ||| | | || | ||| | || || ||| | |||||||||||| | || Sbjct 250352 CGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGTTCGAGAT 250293 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | || || | |||| |||||||| || ||||| ||||| | ||| | || || ||| Sbjct 250292 AGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCGGTGCTGT 250233 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | | || | | ||| || |||| |||||| || ||||| ||||| | |||| ||| Sbjct 250232 TGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCAATA-AAC 250174 Query 48451 TTCCACTAGC-TCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATA 48507 | || || || || | | |||| | ||| || ||||| || |||| || | Sbjct 250173 GTATTCTTGCTTCGGATGCAGTGAACATTG--AGACCGATCCCACCCGCGTTTTTCGAGA 250116 Query 48508 TTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTA 48567 | || ||||| |||| || || ||||| || || || ||||| || || |||| | | Sbjct 250115 TCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCCTTCATTGTAA 250056 Query 48568 ATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATG 48627 | |||||| |||||||| || || | | || || | |||||| | || || || | Sbjct 250055 GCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTGGGTGAGG 249996 Query 48628 CATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCC 48687 | ||||| ||||| || || || | | || || || |||||| ||| || | ||| Sbjct 249995 CGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGTCCACATCTT 249936 Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTT 48745 ||| |||||||| || || ||||| ||||| || ||||| || || |||||| Sbjct 249935 CACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTCCCAAATTTT 249878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562083322418640