Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq10 179 4e-40 >seq10 Length=2030774 Score = 179 bits (198), Expect = 4e-40 Identities = 365/540 (68%), Gaps = 4/540 (1%) Strand=Plus/Plus Query 37160 ATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTC 37219 || |||||| | | ||||||||||| || | |||||||||| ||| |||| || Sbjct 443144 ATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTC 443203 Query 37220 ATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAA 37279 ||| |||||| | || ||||| | ||| | || || | ||| || || | ||||| Sbjct 443204 GTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAA 443263 Query 37280 AGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGT 37339 || ||||||||||| | || |||| || || || || || ||||| || | | Sbjct 443264 TGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGG 443323 Query 37340 TGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAAT 37399 || | | || | |||||| | | |||||| ||||| |||||| | Sbjct 443324 TGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAA 443383 Query 37400 TGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAAT 37459 |||| ||| || || || ||||||| |||| | ||| ||| || |||||||| Sbjct 443384 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCGGATCCTTTACGTAGGTATCAAT 443443 Query 37460 TAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACA 37519 || | | ||||||||||| ||||| ||||| | || | || | ||||||||||| Sbjct 443444 CAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACA 443503 Query 37520 CCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTAT 37579 | ||| || | | ||| || |||||| |||| || || || ||||||||||| || Sbjct 443504 ACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGAT 443563 Query 37580 CCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT--TT 37637 |||||||| || || |||||||| | ||||| || || || | || ||| || Sbjct 443564 GCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATT 443623 Query 37638 GATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAA 37697 | | ||| ||| ||| | | ||| || | |||||||||||| ||||| ||||| ||| Sbjct 443624 AAGA--CTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAA 443681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592289953241040