Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq32 147 2e-30 seq3 134 1e-26 >seq32 Length=1043406 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 |||| || | |||||| || || || ||||| || ||||| |||| | ||| | | || Sbjct 738320 CGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCA 738261 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||||||||||||| ||||| ||||||||||| || || || ||||||||||| ||| Sbjct 738260 TCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTA 738201 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||| || || ||||| | || | | ||| | ||| ||||| || || | Sbjct 738200 TCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATG 738141 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || |||||||||| ||| || ||||| ||||||||| Sbjct 738140 GTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCATG 738105 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 |||| || | |||||| || || || ||||| || ||||| |||| | ||| | | || Sbjct 738092 CGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCA 738033 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||||||||||||| ||||| ||||||||||| || || || |||||||| || ||| Sbjct 738032 TCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCCTCCTTA 737973 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||| || || ||||| | || | | || | ||| ||||| || || | Sbjct 737972 TCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATG 737913 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||||||||| ||| || ||||| |||||||| Sbjct 737912 GTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 Score = 136 bits (150), Expect = 3e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || || || ||||| || |||||||| | | ||| | | || ||||| || Sbjct 738537 ATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTG 738478 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || ||||||||||||||||| ||||||||||| || |||||||| || || Sbjct 738477 CTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTCCTTATCTTGGATCTT 738418 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||||| | || | | ||| | ||| ||||| || || | || |||||||| Sbjct 738417 CGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGT 738358 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || ||| || ||||| ||||||||| Sbjct 738357 TAGAGTCTTGACAAAGATCTGCATG 738333 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||| || || || ||||| || | | || | |||| ||||| ||| Sbjct 738992 TGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATCCTCCAACTGC 738933 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||||||||| ||||| |||||||| || || ||||| ||||| || Sbjct 738932 TTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCCTGAATCTTG 738873 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| | ||||||||| || || | || || || || Sbjct 738872 GCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTCTTCCCAGTC 738813 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || ||||| |||||| Sbjct 738812 AGCGTCTTCACGAATATTTGCATG 738789 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| | || || ||||| || || ||||| || || ||||| || | | ||| | Sbjct 738779 AAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGA 738720 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| ||||| ||||| ||||| || ||||| || || || || || |||||||| || Sbjct 738719 CCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCC 738660 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || || || || || || || | |||| | |||| | ||||| || | ||| Sbjct 738659 TTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCCACCTCCAAGGTG 738600 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || |||||||| | ||||| |||||||||||||| Sbjct 738599 ATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 738562 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || ||||| || ||||| || | | || | | |||| ||||| ||| Sbjct 749216 TGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAACTGC 749157 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||| || || || || || |||||||| || || || || || ||| Sbjct 749156 TTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTT 749097 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | | |||| | ||||| || || |||| |||||||||||| Sbjct 749096 GCCTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTT 749037 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || || || |||||||| Sbjct 749036 AGAGTCTTCACGAAGATCTGCAT 749014 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| ||||| || || || ||||| || ||||| |||| | ||| | | || ||| Sbjct 739226 ACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCC 739167 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || || || || ||||| ||||||||||| ||||| || || || || ||||| |||||| Sbjct 739166 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGA 739107 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | | ||| | || || || || |||| || || Sbjct 739106 ATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 739047 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| ||||| || |||||||| Sbjct 739046 CCGGTAAGAGTCTTTACGAAGATCTGCAT 739018 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| ||||| || || || ||||| || ||||| |||| | ||| | | || ||| Sbjct 731343 ACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCC 731402 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || || || || ||||| ||||||||||| ||||| || || || || ||||| |||||| Sbjct 731403 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGA 731462 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | | ||| | || || || || |||| || || Sbjct 731463 ATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 731522 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| | || || ||||| || |||||| Sbjct 731523 CCGGTAAGCGTCTTCACAAAGATTTGCATG 731552 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || ||||| || || ||||| |||| | || | |||| ||| Sbjct 731115 ACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAACGTGCGACCATCCTCC 731174 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| |||||||| ||||| || || || || || || ||||| || || || || Sbjct 731175 AACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGG 731234 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | |||| | |||| | ||||| || | || | || || Sbjct 731235 ATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAACGTAATTGTCTTC 731294 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || || ||||||||||||||| Sbjct 731295 CCAGTCAGCGTCTTCACAAATATCTGCATG 731324 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || ||||| || || ||||| |||| | || | |||| ||| Sbjct 739454 ACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAACGTGCGACCATCCTCC 739395 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| |||||||| ||||| || || || || || || ||||| || || || || Sbjct 739394 AACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGG 739335 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | |||| | |||| | ||||| || | || | || || Sbjct 739334 ATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAACGTAATTGTCTTC 739275 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || || ||||||||||||||| Sbjct 739274 CCAGTCAGCGTCTTCACAAATATCTGCATG 739245 >seq3 Length=2943993 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || || || ||||||||||| | | | | |||| ||||||||| Sbjct 307579 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGC 307638 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | ||||||||| || || ||||| || || || |||||||| || Sbjct 307639 TTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTA 307698 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || || || | || || |||||||||| ||||||||||| Sbjct 307699 GCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTA 307758 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | |||||| ||||| ||||||||| Sbjct 307759 AGAGTTTTCACAAAAATCTGCATG 307782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396260887714482