Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq32 113 3e-20 seq3 113 3e-20 seq12 98.7 8e-16 >seq32 Length=1043406 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| |||||| || ||||| |||||| ||||| ||||| ||||||||| | ||| | Sbjct 738776 CGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGACCA 738717 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||||||||| || || || |||| ||| || || || | |||| |||||||||| Sbjct 738716 TCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTG 738657 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| || || | | || || | ||||||||||| || || Sbjct 738656 TCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTGGGCTCCACCTCCAAGGTGATG 738597 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || | ||||| ||||| |||||||| Sbjct 738596 GTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 738562 Score = 111 bits (122), Expect = 1e-19 Identities = 146/200 (73%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| |||||||| || || ||||| || | ||| | || ||||||||||| || ||||| Sbjct 737841 CTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAA 737782 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || || || || |||| |||| |||||||||||| |||||| || ||| Sbjct 737781 GATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACA-T 737723 Query 48695 ACCCACAGACTCTGACGC----CTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTT 48750 | || | | || ||| |||||||||| |||||| || || || || | ||||| Sbjct 737722 TCTCA---ATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTTAGAGTTT 737666 Query 48751 TTACAAAAATCTGCATCGTG 48770 | |||||||| ||||||||| Sbjct 737665 TCACAAAAATTTGCATCGTG 737646 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || ||| || ||||| || ||||| ||||| | | ||| Sbjct 748775 AGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGA 748716 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| ||||| || || ||||| | |||| ||||||| Sbjct 748715 CCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCCTCC 748656 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | || || | ||||||||||| || Sbjct 748655 TTGTCCTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTGGGCTCCACCTCCAGTGTG 748596 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || |||||||| || || || || |||||| Sbjct 748595 ATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCATC 748557 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| ||||| ||| |||||||| ||||||||||| ||| | ||| Sbjct 738551 AGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGA 738492 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||||||||||||| || || |||| ||||||||||| | |||| ||||||| Sbjct 738491 CCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGCGGAATGCCCTCC 738432 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| ||||| | | || || | || || || | ||| Sbjct 738431 TTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTT 738372 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || ||||| |||||||| Sbjct 738371 ATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738334 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || ||||| |||||| || || ||||| || || | | ||| Sbjct 731106 AGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAACGTGCGA 731165 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| |||| ||| || || |||| || | ||||||| Sbjct 731166 CCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCC 731225 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | || || | ||||||||||| |||| Sbjct 731226 TTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAACGTA 731285 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || ||||| |||||||| Sbjct 731286 ATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCAT 731323 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || ||||| |||||| || || ||||| || || | | ||| Sbjct 739463 AGACGAAGCACCAAGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAACGTGCGA 739404 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| |||| ||| || || |||| || | ||||||| Sbjct 739403 CCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCC 739344 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | || || | ||||||||||| |||| Sbjct 739343 TTGTCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAACGTA 739284 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || ||||| |||||||| Sbjct 739283 ATTGTCTTCCCAGTCAGCGTCTTCACAAATATCTGCAT 739246 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| ||||| || ||||| |||||||| | || | || ||||||||| Sbjct 749216 TGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAACTGC 749157 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || |||| ||| || || || | |||| |||||||||||| |||||| Sbjct 749156 TTGCCAGCGAAGATCAATCGTTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTT 749097 Query 48684 TGTTTTACAGAACCCA---CAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCC 48740 || || | | || || | ||| | ||||||||||| || || ||||| || Sbjct 749096 GCCTTCAC-GTTCTCAATCGAGTCACTG--GGCTCCACCTCCAGTGTGATTGTTTTGCCG 749040 Query 48741 GTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||| || || || |||||||| Sbjct 749039 GTTAGAGTCTTCACGAAGATCTGCAT 749014 >seq3 Length=2943993 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||||||||||||||||| || | || ||||| ||||| || ||||| Sbjct 307590 CTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAA 307649 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || |||||||| || | |||| ||||||||||| |||||| || ||| Sbjct 307650 AATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCCTTCACATT 307709 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | ||| || || | ||| ||||| | || || ||||| || || | |||||| || Sbjct 307710 CTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCAC 307769 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 307770 AAAAATCTGCAT 307781 >seq12 Length=1725783 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||||||||| || || || ||| | || |||| ||||||||||||||||| || Sbjct 1077014 CTCCTTTTGAATATTATAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAA 1076955 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || || |||||||| | || | ||||| ||||| || ||| |||||| Sbjct 1076954 GATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTT 1076895 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || | ||| ||||| | || || |||||||| || | ||| || || Sbjct 1076894 CTCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAAC 1076835 Query 48755 AAAAATCTGCAT 48766 |||||| ||||| Sbjct 1076834 AAAAATTTGCAT 1076823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380920765653198