Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq12 111 3e-19 seq32 100 5e-16 >seq12 Length=1725783 Score = 111 bits (122), Expect = 3e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||| | || || || ||||| | ||| | ||| || ||||||||||||| Sbjct 1077052 ATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCG 1076993 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | || || || || || ||||| || || | | |||||||| || Sbjct 1076992 GAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGT 1076933 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 |||||||| ||||| ||||| ||||| | ||||| || ||| | ||| | |||| Sbjct 1076932 GGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGCTCA 1076873 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || ||||| ||||| || || || || || ||||| ||||||||| Sbjct 1076872 ACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 1076822 >seq32 Length=1043406 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || ||||| || || || | || | || || ||| || ||||| Sbjct 739019 ATACCACCACGCAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCT 738960 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 |||| || | | ||| || || || || || || || || || | ||| |||||||| Sbjct 738959 GATAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGC 738900 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || ||||| || || |||| || | ||| ||| || ||| || || Sbjct 738899 GGAATACCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCC 738840 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || ||||| || || || ||||| || || ||||||||||| Sbjct 738839 ACTTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCACGAATATTTGCAT 738790 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | | ||| || || ||||| | || | ||| || ||| || |||||| Sbjct 738107 ATGCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCG 738048 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || ||||| || || ||||| || || | ||| || || || Sbjct 738047 GAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGT 737988 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || |||||||| || || | |||| || ||| | |||| | ||| Sbjct 737987 GGAATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCA 737928 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| ||||| || || || ||||| || || ||||| || ||||| Sbjct 737927 ACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | | ||| || || ||||| | || | ||| || ||| || |||||| Sbjct 738335 ATGCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCG 738276 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || ||||| || || ||||| || || | ||| || || || Sbjct 738275 GAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGT 738216 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || || | |||| || ||| | ||| | ||| Sbjct 738215 GGAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCA 738156 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| ||||| || || || ||||| || || ||||| || ||||| Sbjct 738155 ACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738106 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | |||||| || ||||| | || | ||| || ||| || || || Sbjct 738563 ATACCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCA 738504 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | || || || || || || || ||||| || | ||||||||| || Sbjct 738503 GAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGC 738444 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || |||||||| || || | |||| || ||| | ||| | ||| Sbjct 738443 GGAATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCA 738384 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| ||||| || || || ||||| || || ||||| || ||||| Sbjct 738383 ACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899613623164320