Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq10 118 2e-21 seq12 100 4e-16 >seq10 Length=2030774 Score = 118 bits (130), Expect = 2e-21 Identities = 348/530 (66%), Gaps = 12/530 (2%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || |||||||| ||||| | |||||||||| || | ||||||||||| || | Sbjct 443160 CATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGG 443219 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | ||| | || || ||||| || || || || || || |||||||||| Sbjct 443220 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAAT 443279 Query 18278 ATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAAC-TG--TATTTATTGCT 18333 | ||||||| ||| |||||||| | | | || || | || | |||||| Sbjct 443280 ACGCCCTCAATAGCA-GCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTTG- 443337 Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 || ||||| | | ||||| || | | | |||||| | | | || || Sbjct 443338 CA--ATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGC 443395 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||||||| | || |||| | ||| |||| || || || || | | ||| || Sbjct 443396 GTTAAACAGAAAGTCGCGTTCTACCGGATCCTTTACGTAGGTATCAATCAGAAGAGAGTA 443455 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||||||||||| ||| |||| | || | || | | |||||| | | ||||||||| Sbjct 443456 CATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGG 443515 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTA--CCAAATTCTCATTAACTATACCGTCAGCA 18571 | ||| | |||| || |||| ||| | | ||| |||||||| || || ||| Sbjct 443516 AATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGCCATCACTG 443573 Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC 18631 | ||||| || ||||| ||||| |||||| || || ||| || ||| | | | Sbjct 443574 GCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCC 443633 Query 18632 CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681 || ||| | ||| || | || ||||||||| || |||||| ||||| Sbjct 443634 CAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGA 443683 >seq12 Length=1725783 Score = 100 bits (110), Expect = 4e-16 Identities = 166/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||||||||| || || | || || || Sbjct 1076822 AATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAG 1076881 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||||| ||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 1076882 TGATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCA 1076941 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | | || | |||||||||||| | || || | ||| | || || ||||| Sbjct 1076942 ACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTATAA 1077001 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAAT 156057 ||| || ||| ||| |||| || ||| | || ||||| || |||| || | |||| Sbjct 1077002 TAT-TCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACTACGAGGAGGCATGAAAT 1077057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731838827901600