Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3 116 7e-21 seq32 113 9e-20 seq12 102 2e-16 >seq3 Length=2943993 Score = 116 bits (128), Expect = 7e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||||||||| | ||| |||| |||||||| || |||||||| || | | | Sbjct 307600 ATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGC 307659 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| || ||||| || || || || ||||| || ||| || ||||| |||||| Sbjct 307660 TGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATAGAA 307719 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | || || || ||||| || ||||| || || | ||||| | ||| |||||| Sbjct 307720 TCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGC 307779 Query 192535 AT 192536 || Sbjct 307780 AT 307781 >seq32 Length=1043406 Score = 113 bits (124), Expect = 9e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||| |||| || | ||| | || | ||| ||| || || || || || Sbjct 738335 ATGCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGA-ATGTTGTAGTC 738277 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || |||| |||||||| |||||||||||||| || | ||| || || || Sbjct 738276 GGAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGG 738217 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||| |||||||| || || ||||| || || ||||| | ||| Sbjct 738216 TGGAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTC 738157 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || ||||| || || |||| || || | ||| |||||||| Sbjct 738156 AACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738106 Score = 107 bits (118), Expect = 4e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||| |||| || | ||| | || | ||| ||| || || || || || Sbjct 738107 ATGCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGA-ATGTTGTAGTC 738049 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || |||| |||||||| |||||||||||||| || | ||| || || || Sbjct 738048 GGAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGG 737989 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || || || |||||||| || || ||||| || || ||||| | ||| Sbjct 737988 TGGAATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTC 737929 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || ||||| || || |||| || || | ||| |||||||| Sbjct 737928 AACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 >seq12 Length=1725783 Score = 102 bits (112), Expect = 2e-16 Identities = 138/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || |||||||| || || | || || | || ||||| || ||||| || |||| Sbjct 1077011 CTTTTGA-ATATTATAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGA 1076953 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | | |||||||| ||||||||||| ||||| ||||| ||||| |||||| || Sbjct 1076952 TAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCT 1076893 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || ||||| | || || || || || |||||||| ||||| | || |||| || Sbjct 1076892 CAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAA 1076833 Query 192527 ATATCTGCATT 192537 | || |||||| Sbjct 1076832 AAATTTGCATT 1076822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984434262905100