Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3 114 2e-20 seq32 104 4e-17 seq12 93.3 8e-14 >seq3 Length=2943993 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| ||||| || ||| | || |||||||| || ||||||||||| | | Sbjct 307599 AATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACG 307658 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||| ||||| || || || || ||||| || ||| || ||||| |||| Sbjct 307659 CTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATAGA 307718 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | || || || ||||| || ||||| || || | ||||| | || ||||| Sbjct 307719 ATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTG 307778 Query 172067 CAT 172069 ||| Sbjct 307779 CAT 307781 >seq32 Length=1043406 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | |||||||| || | ||| | || | ||| || ||| || || || Sbjct 738335 ATGCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCG 738276 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || |||||||| ||||||||||| || || | ||| ||||| ||| Sbjct 738275 GAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGT 738216 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || ||||| || || | ||| | ||| Sbjct 738215 GGAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCA 738156 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || ||||| || || |||| || || | || |||||||| Sbjct 738155 ACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATCTGCAT 738106 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | |||||||| || | ||| | || | ||| || ||| || || || Sbjct 738107 ATGCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCG 738048 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || |||||||| ||||||||||| || || | ||| ||||| ||| Sbjct 738047 GAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGT 737988 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || ||||| || || | ||| | ||| Sbjct 737987 GGAATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCA 737928 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || ||||| || || |||| || || | || |||||||| Sbjct 737927 ACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 737878 >seq12 Length=1725783 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| |||| || || | ||| | || | ||| || ||||||||| || Sbjct 1077052 ATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCG 1076993 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| ||||| || ||||| || || || | | ||||| || ||| Sbjct 1076992 GAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGT 1076933 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 |||||||| ||||| ||||| ||||| |||||| || || | ||| | || Sbjct 1076932 GGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGCTCA 1076873 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || |||||||| ||||| | || |||| || || |||||| Sbjct 1076872 ACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 1076822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905094974710800